RNA id: TCONS_00012397


Basic Information

Item Value
RNA id TCONS_00012397
length 669
RNA type nonsense_mediated_decay
GC content 0.41
exon number 4
gene id XLOC_006386
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 4307583 ~ 4333181 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTTAACAACGAGGACACAGAAGTGGTTCAGGGTGAAGAATCTCCTAAGAACGAAGACCCAAATGTTGAACAATCATTTGAGGCAATCTTAAAACCTGACATTCAGAATGAAAACGTTGATGCAAAAGAAAATCTTGATGATCAGCAAGCTTTTAAATCTATTGATATCACTATGGGGGATGTTACTGACATGGAAGTTAACAGTGTGGACACACTACTGCAGACAAACAATGAGGAACTGCCTCTGGATTCAGAGGAGCCCATGGCATTCTCTCCTCTTCCTGGCTCTTTCACCGAACAACTGAACTTGGACACATTTGAATTCAGTTTTGAGCCTCTGTAAAGGACCTTCCAAGAGTAATGCCAGTGAAAGCGTGGACTGAAAAGCATTCATTCTGAAGTGGGTGCCGGGGGAAGGAATCCCTCAAAGAGATTGAAAACTTTCCTCAAAAACCATTCCTTTTTCCCCAAAGGAGTCAGAAAGATCCAGGCTCAGAGAAGACAAATGGCGTGGCGTTCATGCTTCAAGGACATATGCATTCACAATTCTGCCCAGAAAATACCCGGCTTGGTCTCTGTAGTTTTTACTTACGCTGTACTATGTGTTGGTAGCTTTTCTTTcaagatttcttttttcttttctgaaaaacaaacaaatgaaaaaaaaaa

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-140106-251 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZNF318 (zinc finger protein 318).

Ensembl:

ensembl_id ENSDART00000166277

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013731 lncRNA downstream 346414 3960097 ~ 3961271 (-) True XLOC_006382
TCONS_00013456 lncRNA downstream 1383561 2919298 ~ 2924124 (-) True XLOC_006372
TCONS_00013730 lncRNA downstream 1399530 2899327 ~ 2908155 (-) True XLOC_006371
TCONS_00013455 lncRNA downstream 1804509 2502083 ~ 2503176 (-) True XLOC_006366
TCONS_00013454 lncRNA downstream 1804662 2502083 ~ 2503023 (-) False XLOC_006366
TCONS_00013732 lncRNA upstream 96626 4405292 ~ 4407072 (-) True XLOC_006388
TCONS_00013733 lncRNA upstream 99191 4407857 ~ 4408486 (-) True XLOC_006389
TCONS_00012400 lncRNA upstream 136887 4445553 ~ 4447207 (-) False XLOC_006390
TCONS_00012401 lncRNA upstream 136912 4445578 ~ 4447653 (-) True XLOC_006390
TCONS_00012406 lncRNA upstream 403755 4712421 ~ 4714106 (-) True XLOC_006393
TCONS_00012395 mRNA downstream 4044 4232568 ~ 4303641 (-) True XLOC_006385
TCONS_00012393 mRNA downstream 83730 4218329 ~ 4223955 (-) True XLOC_006384
TCONS_00012392 mRNA downstream 173544 3982950 ~ 4134141 (-) True XLOC_006383
TCONS_00012391 mRNA downstream 288797 3979341 ~ 4018888 (-) False XLOC_006383
TCONS_00012390 mRNA downstream 371130 3915260 ~ 3936555 (-) True XLOC_006381
TCONS_00012398 mRNA upstream 30216 4338882 ~ 4367083 (-) False XLOC_006387
TCONS_00012399 mRNA upstream 55343 4364009 ~ 4396657 (-) True XLOC_006387
TCONS_00012403 mRNA upstream 347838 4656504 ~ 4664403 (-) False XLOC_006391
TCONS_00012402 mRNA upstream 347838 4656504 ~ 4664403 (-) True XLOC_006391
TCONS_00012404 mRNA upstream 376643 4685309 ~ 4707018 (-) False XLOC_006392
TCONS_00012394 other downstream 83730 4218329 ~ 4223955 (-) False XLOC_006384
TCONS_00012381 other downstream 1064427 3198438 ~ 3243258 (-) True XLOC_006376
TCONS_00012378 other downstream 1252748 3054823 ~ 3054937 (-) True XLOC_006374
TCONS_00012376 other downstream 1448274 2857461 ~ 2859411 (-) True XLOC_006370
TCONS_00012375 other downstream 1451413 2854325 ~ 2856272 (-) True XLOC_006369
TCONS_00012410 other upstream 667509 4976175 ~ 4992385 (-) False XLOC_006396
TCONS_00012432 other upstream 1939321 6247987 ~ 6252514 (-) True XLOC_006414
TCONS_00012435 other upstream 1979878 6288544 ~ 6320158 (-) False XLOC_006416
TCONS_00012458 other upstream 4341045 8649711 ~ 8650051 (-) True XLOC_006434
TCONS_00012459 other upstream 4346453 8655119 ~ 8655447 (-) True XLOC_006435

Expression Profile

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