XLOC_006404 (meis1b)


Basic Information

Item Value
gene id XLOC_006404
gene name meis1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 5490551 ~ 5569562 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012419
AGTCTGGTCCAGATTCAGCTGCTGAGCCGCGTTCAACACACACTCATTGTACACAAACGGGGAAAGGCAGCTCGCAGCATCGATCGTGGCTCCTTTAAGAAAAACTAAGCCAGAATTATCAGCCCACCTCCTCTTGATCTCATTTAGAAGCTATTGCATAAAAAATCAACTCAGGAGCCGAGAGTGATCAAAGAAACGAGAGAGAGCTTCATTTTTGTGCATTTGAGTAGTATTCTCGTTAGGGGTGCTAACCAGTGGAAGCGCGCGGAGGATCATCATTCATTCAGCACTTTGACAAGCTCGCGtttgattgattgacagccgGAGTGGCAAAAAGCCATGAGATGCGTTAGTTTTGTCTGAGGGGCTATTTTCATACAGCTTTGGAAAAGAAGATTTTGCTCGATCCTTGTCGCTGTCCAGGGGAAAGAACGCGAAGGGGACCTATCGCTGAACGCGTCTGGCTGAACTTGCGGTGAAGGACTGGCTTCACATCGCTCGCTCGAAACAGGCATTTGGATTTTTTGGGCAAAACATATCCCACATTTGGAATTTGCGTGTTTATTTCCCATTCACCCTGGCCTCATAGGGGATATATTTTTGACTAAAGGAAGACGAGGGAGTGTGGAGGGCGATGGCGCAGAGGTACGAAGATATACCCCACTATGGGATGGACGGAGTAGGAATCCCGAGCACGATGTACGGGGACCCGCACGCCGCCAGATCCATGCAGGCTGTTCACCTGAATCACGGGCCCCAGCTCCACTCCCACCAGTACCCGCACACAGCCCACACCAACGCCATGCCGCCCAGCATGGGCTCATCCGTCAATGACGCTCTAAAAAGAGATAAAGACTCCATTTACGGGCACCCCTTGTTCCCTCTTCTAGCACTGATTTTTGAGAAATGTGAATTAGCCACTTGCACACCTAGAGAACCCGGTGTTGCTGGGGGCGATGTGTGTTCATCAGAGTCTTTCAATGAGGATATAGCAGTGTTTGCAAAACAGATTCGAGCAGAAAAGCCGCTATTTTCGTCAAATCCTGAGCTGGATAATTTGATGATTCAAGCCATTCAAGTTTTACGGTTTCATCTTTTGGAGCTCGAAAAGGTACATGAACTTTGTGACAATTTTTGTCATCGGTACATCAGCTGTTTGAAGGGGAAGATGCCCATCGACTTGGTTATAGACGACAGAGAAGGAGGATCAAAATCAGACAGTGAAGAAATTACGAGATCATCGGGGCCCCTTGATCAGACCTCATGGAACAGAGACCATGATGACACAGCTTCTACACGCTCTGGCGGCACACCAGGACCATCCAGTGGAGGACACACATCGCACAGCGGCGACAACAGCAGCGAACAAGGTGATGGTCTGGACAACAGTGTGGCATCACCTAGCACAGGAGATGATGACGACCCTGACAAGGAGAAGAAGAGGAACAAAAAACGCGGAATCTTTCCTAAAGTGGCAACAAACATTATGAGGGCATGGCTCTTCCAGCACTTGACGCACCCCTACCCTTCAGAAGAACAGAAAAAGCAACTGGCACAAGACACCGGGCTCACTATACTACAAGTGAACAACTGgttCATTAACGCAAGAAGAAGAATAGTGCAGCCCATGATCGACCAATCCAACCGAGCAGTAAGTCAAGGAGCTCCCTACAACCCAGATGGTCAACCCATGGGAGGCTTCGTGATGGACGGCCAGCAGCACATGGGAATCAGACCACCTGGGCCTATGAGTGGGATGGGAATGAATATGGGCATGGAGGGACAGTGGCACTACATGTAACCTTCTAGTTAACCAATCGCAAAGCAATGGGGGAAGACTACAGAGCATGCCAGGGGATTACCTGTCACACAGTGGCCCGGTGGCGATGGCAATGGGGCAACCAGGCTACAGCGCTTCCCAGATGCCCCACCACCCTGCTCAGTTGCGGCACGGCCCTCCCATGCGTTCATACATCCCTGGACACCTCCATCACCCGGCGATGTTAATGCACGGAGGACCGCCTCACCCTGCCATGCCCATGTCAGCCTCAAGCCCCCCAATGTTCAATCCAGGAGATCCAACAATGGGAGGACAATACATGGACATACATGCCCAGTAATTTACTAAAACGGATTCTTTAAATGACTGCAATGGACAGACGAGGATGCTGCGATTGGTTTTTTTGGGGGCTTCCAAAGCACCGATTAcatactgactttttttttacagagactAGGGAGCTTGCATCTTGGCTAGAGTTTTGGACCAAGAAAGAAGCCAATTTCTGTAAACTCTGAGACACTTTAAAAGGAGGTGCCCTTTGCATAGAcgcaaaaagagaaagaaaatttGAATTTATTACTATATCAGCCTCTAAAGGGGAGGGATGAGGACATACTGTATACTGTTGTAAAACTGCATTGGACTTTCATAAGAACTGGGAAAAAAAGTATTGTAAATGCTATCGTATTGTTCTGCATATTATGTTGTttctaatagatttttttaaaaaaggatgtGAACTTTTTTTCTTTCCACACTATGTGTGTGCCATCTCCATAAACTTTTGGCCTCCTTCATAAATCACTTTGCGTTTaaaccagaaaaagaaaaaatatatgtgaataaatcaataattcaTTG
>TCONS_00012420
ATGGCGCAGAGGTACGAAGATATACCCCACTATGGGATGGACGGAGTAGGAATCCCGAGCACGATGTACGGGGACCCGCACGCCGCCAGATCCATGCAGGCTGTTCACCTGAATCACGGGCCCCAGCTCCACTCCCACCAGTACCCGCACACAGCCCACACCAACGCCATGCCGCCCAGCATGGGCTCATCCGTCAATGACGCTCTAAAAAGAGATAAAGACTCCATTTACGGGCACCCCTTGTTCCCTCTTCTAGCACTGATTTTTGAGAAATGTGAATTAGCCACTTGCACACCTAGAGAACCCGGTGTTGCTGGGGGCGATGTGTGTTCATCAGAGTCTTTCAATGAGGATATAGCAGTGTTTGCAAAACAGATTCGAGCAGAAAAGCCGCTATTTTCGTCAAATCCTGAGCTGGATAATTTGATGATTCAAGCCATTCAAGTTTTACGGTTTCATCTTTTGGAGCTCGAAAAGGTACATGAACTTTGTGACAATTTTTGTCATCGGTACATCAGCTGTTTGAAGGGGAAGATGCCCATCGACTTGGTTATAGACGACAGAGAAGGAGGATCAAAATCAGACAGTGAAGAAATTACGAGATCATCGGGGCCCCTTGATCAGACCTCATGGAACAGAGACCATGATGACACAGCTTCTACACGCTCTGGCGGCACACCAGGACCATCCAGTGGAGGACACACATCGCACAGCGGCGACAACAGCAGCGAACAAGGTGATGGTCTGGACAACAGTGTGGCATCACCTAGCACAGGAGATGATGACGACCCTGACAAGGAGAAGAAGAGGAACAAAAAACGCGGAATCTTTCCTAAAGTGGCAACAAACATTATGAGGGCATGGCTCTTCCAGCACTTGACGCACCCCTACCCTTCAGAAGAACAGAAAAAGCAACTGGCACAAGACACCGGGCTCACTATACTACAAGTGAACAACTGgttCATTAACGCAAGAAGAAGAATAGTGCAGCCCATGATCGACCAATCCAACCGAGCAGTAAGTCAAGGAGCTCCCTACAACCCAGATGGTCAACCCATGGGAGGCTTCGTGATGGACGGCCAGCAGCACATGGGAATCAGACCACCTGGACTACAGAGCATGCCAGGGGATTACCTGTCACACAGTGGCCCGGTGGCGATGGCAATGGGGCAACCAGGCTACAGCGCTTCCCAGATGCCCCACCACCCTGCTCAGTTGCGGCACGGCCCTCCCATGCGTTCATACATCCCTGGACACCTCCATCACCCGGCGATGTTAATGCACGGAGGACCGCCTCACCCTGCCATGCCCATGTCAGCCTCAAGCCCCCCAATGTTCAATCCAGGAGATCCAACAATGGGAGGACAATACATGGACATACATGCCCAGTAA
>TCONS_00012421
TTCGTCAAATCCTGAGCTGGATAATTTGATGATTCAAGCCATTCAAGTTTTACGGTTTCATCTTTTGGAGCTCGAAAAGGTACATGAACTTTGTGACAATTTTTGTCATCGGTACATCAGCTGTTTGAAGGGGAAGATGCCCATCGACTTGGTTATAGACGACAGAGAAGGAGGATCAAAATCAGACAGTGAAGAAATTACGAGATCATCGGGGCCCCTTGATCAGACCTCATGGAACAGAGACCATGATGACACAGCTTCTACACGCTCTGGCGGCACACCAGGACCATCCAGTGGAGGACACACATCGCACAGCGGCGACAACAGCAGCGAACAAGGTGATGGTCTGGACAACAGTGTGGCATCACCTAGCACAGGAGATGATGACGACCCTGACAAGGAGAAGAAGAGGAACAAAAAACGCGGAATCTTTCCTAAAGTGGCAACAAACATTATGAGGGCATGGCTCTTCCAGCACTTGACGGTGAGTCCAGTAATATGATATTTCAGCCTGatcgtaagtattttacgttttgccagtttagtggctaattcgtacgagttcagtcgtacaaaatggtacgattttaaagaGGAGgagtggcacctaaccccacccctaaccccaaccgtcattgggggatgagcaaattgtactaaattgtacaaattagatcgtaggaattcatacgaattagccactaaatgaaaaaggtacgaattgctgtgagattgtgttgaatgtTTCCTCTTTTTTGCTTCTCTATGAGTATTCTTTAACTGCACGCTGCTCTTCAAATGCCTTAAAGTGGTCAACGCACATGCTtgcttacacacacaaacattcactttATCTTGCCTAGCCTTAATCACACACGTTCAGTTTTTTAgcc

Function

symbol description
meis1b Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in blood vessel development; hemopoiesis; and positive regulation of angiogenesis. Acts upstream of or within several processes, including blood vessel morphogenesis; embryonic organ development; and embryonic retina morphogenesis in camera-type eye. Located in cytosol and nucleus. Is expressed in several structures, including anterior neural keel; hindbrain neural keel; immature eye; nervous system; and neural rod. Orthologous to human MEIS1 (Meis homeobox 1).

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0045766 positive regulation of angiogenesis biological_process
GO:0000082 G1/S transition of mitotic cell cycle biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0001525 angiogenesis biological_process
GO:0048844 artery morphogenesis biological_process
GO:0030223 neutrophil differentiation biological_process
GO:0030225 macrophage differentiation biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0035907 dorsal aorta development biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0001885 endothelial cell development biological_process
GO:0072554 blood vessel lumenization biological_process
GO:0001654 eye development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007420 brain development biological_process
GO:0050821 protein stabilization biological_process
GO:0001944 vasculature development biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0001947 heart looping biological_process
GO:0035476 angioblast cell migration biological_process
GO:0060319 primitive erythrocyte differentiation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0060841 venous blood vessel development biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0005515 protein binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020122-1 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in blood vessel development; hemopoiesis; and positive regulation of angiogenesis. Acts upstream of or within several processes, including blood vessel morphogenesis; embryonic organ development; and embryonic retina morphogenesis in camera-type eye. Located in cytosol and nucleus. Is expressed in several structures, including anterior neural keel; hindbrain neural keel; immature eye; nervous system; and neural rod. Orthologous to human MEIS1 (Meis homeobox 1).

Ensembl:

ensembl_id ENSDARG00000012078

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012419 False 2644 mRNA 0.47 13 5490551 5569562
TCONS_00012420 False 1392 mRNA 0.52 12 5491075 5568928
TCONS_00012421 True 893 lncRNA 0.44 5 5531186 5565818

Neighbor

gene id symbol gene type direction distance location
XLOC_006403 NA coding downstream 2938 5480987 ~ 5487613 (-)
XLOC_006402 NA coding downstream 18962 5464154 ~ 5471589 (-)
XLOC_006401 NA coding downstream 94631 5390497 ~ 5395920 (-)
XLOC_006400 NA coding downstream 124641 5360309 ~ 5365910 (-)
XLOC_006399 si:dkey-78p8.1 coding downstream 233248 5243167 ~ 5257303 (-)
XLOC_006405 CR926469.1 coding upstream 9535 5579097 ~ 5624415 (-)
XLOC_006406 NA coding upstream 161353 5730915 ~ 5732497 (-)
XLOC_006407 spred2b coding upstream 301082 5870644 ~ 5937034 (-)
XLOC_006408 actr2b coding upstream 377045 5946607 ~ 5978433 (-)
XLOC_006409 CABZ01033394.1 coding upstream 463282 6032844 ~ 6038477 (-)
XLOC_006338 rn7sk misc downstream 4664326 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 4695179 10264741 ~ 10264905 (-)
XLOC_006394 NA non-coding downstream 771158 4717790 ~ 4719393 (-)
XLOC_006411 NA non-coding upstream 580659 6150221 ~ 6187744 (-)
XLOC_006412 CU984583.1 non-coding upstream 591019 6160581 ~ 6161564 (-)
XLOC_006417 NA non-coding upstream 765802 6335364 ~ 6338658 (-)

Expression


Co-expression Network