XLOC_006399 (si:dkey-78p8.1)


Basic Information

Item Value
gene id XLOC_006399
gene name si:dkey-78p8.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 5243167 ~ 5257303 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012417
GAGCAGAACTTTTAAAGTTGCCCcgaagaaaatgaaaacaaagagaCACATGATCGGACTTAAACAGTCACAGTCTCCTTCTTGTTATAATTCGAACAACTGTCACAAAGATTTTACAACCCCAAAACGAAGACCAAGAGTCAGATTCAACGGTTCCTACGGTGGAGATTCGCCTAATGAGACTGAATCCCCGCAAGATATCATCTGGGATCCAAACTCACCCACGCAAGATTTGAATGGACAAGGTGATGGGAGAGTCATTGAAATATCAGAGATTGTCAACAGAATTGCACCGACAGTTGAGAAAACCAAAGATGGAGACTCGGTGCTCCAGTGGATTGGAGACAGTGCCATTCCTTGCACTCCAGAAATTCGACAGCCCAGAGTCAGGAGGATCTCCACACGgcaGAGCAATGTTGAGGACTTGAAGAAACTTGCAAAACAGTTTGACATCAGTATGACTCGCCAGGACAAAGAGAAGGCACAAGAGAGCAcagaaggaaaaaataaacttaataagCTACAAAGTGATGGTGCAATGACAATGCAGAGATCACCATCAATCCCAGTCTTGTCTGCAAAGCTAGAGGAAGAGGAGCAGGAGCTTCAGGCGCTGTTTGACGGTCCCACTCAGCATGTAAGTGGGAGACTGAGCCCACCATCAGTAAACTGCACTCCAGAAAACACAACTGAACCGGTAGCTCAGGTTGATCTGAGATCGAGTTGTGCATCTAAAACTACAAATTTTGACGATGACTGGGAAAATGACGACCTGCTAAATGACTCGTTTGTGTTAGAAATGACACATAATCCAGGTCCTATAAATGTACCTCAGAAACGAAGCACTGCTCTGCCTGAACCTTCcactttaaaatgccattttgtgACCAAGATTAATCAATCTAATGCCAGAAGCATCTGCACAGAGAGTCAACAGAGTACCAGTAAAAGCAGCACCTTTATCAAGACACTTCCCGAAGTCAATGCATCAAATCAAAGCACTTTTAGGCCGAAGCCATCCACTTCTGCCAAGAATCAAATTACTGAGAAGCTGCTAAAGACTGCGCCTGTGAACCAAGTAAACCAGCAAGCTTGTTCATCCCAGCATACAGGAAAAGCGGAGCTTGATGAAGCCTCCAAAAACAGCGGAGCTTCAAGCCAGGCCTCTTCTCAGTTTGATGGGGTTTCAGAAGAGGACATGAAGTCTCTATTTGATTCTGACGGTCTGTGGAATGATGAAGATGACGATCTGCTTTTCAAGGTTTGCGACGATGTGGAGAAGTTATCTGCCAGTCAGGAACAGCAAAAACTTGCACATGAGTCTATAAGCTCTGCCTCTAAAGCACCTTCCTCTTCCAACACCATTGGCCAATCACAAGCACCCACAAAGTCCATACGAGTCTTTGCTCGCTCAAATTCGGTACCATGCACAAGTGGAAGCTCTGGGTTTATTCTGGGATACAGTGTGTTACCAACTTCTGAAAGTTCCGGCTCTGGTTCAGGAAATCAGAGCGCTCAGCATTATGGGCATGCACAAAACAATTCAGACTTAGCACACAAGACTGGAGTCAGAGCCATGGGCTCTTCACAGACTGGAGGAAATACTTCTAAATCCCACCATTGCACGTTCAAGAGACATCTGTCAGACTCTATGACGCTCACCAACAAAGTTTTTATTTCTTCCCACTCGACACCCAAGTGTTCAGCTGCTGAGATAGAGAGGAAGAAACAGGAAGCCATTGCAAGGAGGAGATTACGGATGCAGGCCAGCcagaaaactggagcacctacgTAAGAGCCGGTACTCTACCGAATGCACTGGGCTGAAAAGGACTAAATTATGGGATCATGACGACACTGTAAGCATTTCAATGTAGCGACAGAGTAGCCTAACACTAATATGTGTGTTTTaagtagtgttgtcacaatactggaattcgataccaatcagtactgaaaaaaaaaaaaagtcaatttcttgctaacatttgagcacattctttaacacagctgatttgccattgtgttcatgctcaacagaaatgattggctgtgaaggttatcagttcaccgaactcacctcTGTTTACAGAGTGTGacaacagatacagggacactggagtgttttaaagacacgaagatcagctggtttgtttataagctgacattCAAGTGATCCTCTGATTaatcgactgatcttcatggctttaaaatgctccagagtctctgtatctgtggttacgTTCAGTAAATAGACGTAAGTTTGGTGAACTGGCCAATCAATGGtgtttctgttgagcatgtgaacgcaatggcaaatcagcagtgttaaAGAATGCATtgaaatgttagcgggaaatggatgttttttaaatttcagtatcgattggtatcgaattccagtatcgtgtcGGTACTCTACCCTATGCATTGGGCTGATCAGGACTAAATTATGGGATTATGACACTGTAACCATTTCAATGTAGCAACAGGAGAGCTTAACACTAATTTGTCTCTAAGTaatgttgtcatgatactggaattccaTACCAATCgttactgaaatttaaaaaatgtccatttctcacaaacatttgagcgcgttcttaaacgtcgctgatttgtcattgtgttcatgtgctccaCAGAAATGATTAGCCATCAGTTCACTAAACTCACCTCTGTTTACTGAATGTGACAACAGATACAGGGACGCTGTAGTGTTTTAAAGACACGAAGATCAGCTGGTTTGATTATAAGCTGATATTCGAGTGATCCTCTGATTaatcgactgatcttcatggctttaaaacgctcctgtgtccctgtatctgtggttacattcagtaaacagcggtgagctGATGACCTacgcagccaatcacagtcatttctgttgagcatgtgaacaatGGCAAATCAGAAGTATTTAAGAACGTGCTCGAATGTAACGGAGAATGGACGTTGTTtaaatttcagtattgattggtatcgaattccagtatcgtgccAGTACTCTACCAAATGCATTGGGCTGAAAAGGACTAAATTATGGGATGATGACACTAATCATTTCAATGTAGCGACAGAAGAGCTTAACACTAATTTGTCTCTTTTaagtagtgttgtcacgatactggaattcgatagcAATCagtaatgaaatttaaaaaacatccatttcccgcgAACAGTTAAGCGTGtttttaaacacagctgatttgccattgtgttcatttGCTCCACAGAAATGATTGGCCATGaaagtcatcagttcaccgaactcaccactgtttactgtgtgtaaacacagatacagggacactggaacGTTTTAAAGTCACtaagatcagctggtctgtttatgAGAGGACATACGAGCGATTCGCTGATAaatcgactgatcttcatggctttaaatcgctccagtgtccctgtatttgtgcttacactcagtaaacagcagtgagtttggtaACCTGGTGACCTTCGccaccaatcacagtcatttctgttggaCACAATGGAAAATCAGCAGTGTTGAAGaacgcgctcaaatgttagcgggaaatggacgttttgaAAATGTCAGTGCTGATTAGTATCGAATTTTATtattgtgacaacactacctATAAGAAAATGTTACTTGAAGAAATCTTCTGGATAATGTACCAAATGGGTGCAGtataacaccaaaaaaaaaagcaatttcttGCACATTTTAGTTTCAATATTACAACCCAGTATTGTGAGTAAATTTAACGTCTGATGTCTTCACAATTTTTGatgaaacatttttacagtgtgccatCTAAATTGTGATGGAACGGATCCTAGATTTCGGATCATTTCTCAGCATGTCAACTTTTATTCACTCATTCCtgaagatgtaaaaaaaaaacttgaattttTTTGTCGATCAAAACCTAAAGGTCCTGGCGATCTTGTCTATTTGTTATCTTTATGTTTTCCGTTCAACACAATTGTGTTTCAGTATTAAAAGAAGCAAACGAAAATAAGAAACAAGCTTGGCTTTGTGTATTGTTGCCTTCAGAagcctttattaaaacatttCCAACGTCGACTGCAATCTTTGGGTCTCTGTCATTGCCTAATAACAGCCTAATGATATTATTACCTCCAGAAATAGCAAATACCTTCATGTGTAATGCTCTTAAAAtataatttctaaaaaaattgCCATTTTCGGATCTAATAAAACAATATCTCTTTCCAGTTACAACCCGTCCACATCTGGTTTATTGtatatgctcaacagaaattactgtgtTGGCCGTGAAAGTCATCAGCTGAATTCacagctgtttactgagtgtaaacacagtttcggggacactggagtgttttattGGCAcaaagatcagctggtctgtttataaGCGGACATACAAACGATctgctgatgaatcgactgatcttcacggctgtaAAACGCTCCGGTGTCCCTGATCTGTCGTTACACTCAGTAAAATAGCTGTGAGTTTGGTGAATTGATGATCTTCATGGCCAATCGCAAATCAGTGGTGTTAAAGAAGGCGCTCAAATATTAGCGGAAAATGGGcgtttttaatatttcagttcCAATTGCTAACGAATTCCAGTAGAGTGACAACACTACTTATCAGAAAATGTTACTTGAAGAAATCTTCTGAATAATGTACCAAATAGGTGGAGTATAACATACAAAAAAAGCAATTTCttgcacattttagttccaaTGTTACAACCCAGTGTTGTGAGTAAATTTAACGTCTGATGTCTTCACAATTTTTGATGAAACATTTTTACCGTGTGCCATTTAAATTGTGATGGAACGGATCCTAGATTTCGGATCATTTCTCAGCATGTCAACTTTTATTCACTCATTCCTGAAGatgtaaaaaaaacttgaattttTTTTGTCGATCAAAACCTAAAGGTCCTGGCGATCTTGTCTATTTGTTATCTTTATGTTTTCCGTTCAACACAATTGTGTTTCAGTATTAAAAGAAGCAAACGAAAATAAGTAACAAGCTTGGCTTTGTGTATTGTTGCCTTCAGAagcctttattaaaacatttCCAACGTCGACTGCAATCTTTGGGTCTCTGTCATTGCCTAATAACAGCCTAAtgatataattataatgatataattaattaatataatcttcTAAAAAAAATTGCCATTTTCGGCTCTAATAAAACAATATCTCTTTCCAGTTACAACCCGTCCACATCTGGTTTATTGtatatgctcaacagaaattactgtgtTGGCCGTGAAAGTCATCAGCTGAATTCacagctgtttactgagtgtaaacacagtttcggggacactggagtgttttattGGCAcaaagatcagctggtctgtttataaGCGGACATACaagcgatctgctgatgaatcgactgatcttcacggctgtaAAACGCTCCGGTGTCCCTGATCTGTCGTTACACTCAGTAAAATAGCTGTGAGTTTGGTGAATTGATGatcttcatggccaatcacaaaTCAGTGGTGTTAAAGAAggagctcaaatgttagcggaaaATGGGCGTTTTTAATATGTCAGTTccaattggtatcgaattccagtatcgtgacaacactacttATCAGAAAATGTTACTTGAAGAAATCTTCTGAATAATGTACCAAACAGTTGGAGTATAACATACAAAAAAAGCAATTTCttgcacattttagttccaaTGTTACAACCCAGTGTTGTGAGTAAATTTAACGTCTGATGTCTTCACAATTTTTGATGAAACATTTTTACCGTGTGCCATTTAAATTATGATGGAACGGATCCTAGATTTCGGATCATTTCTCAGCATGTCAACTTTTTTTCACTCATTCCtgaagatgtaaaaaaaaacttgaattttTTTGTCGATCAAAACCTAAAGGTCCTGGCGATCTTGTCTATTTGTTATCTTTCCGTTTTCCGTTCAACACAATTGTGTTTCAGTATTAAAAGAAGCAAACGAAAACAAGAA
>TCONS_00012418
TTCGTGTTGGTGTCATATGGTTTTGGAACATTTTACTGTTTTGGTTTTATGATTTGGCCATTTTGACCAAGGAAAATCCTTTTAGAAATGTAGTTCTCAAAACCATTGCATATactaatgtaatgttttattttgttaaggaattaaaaagaaaaagagtgTCATGTTAATGTTCATGTTAGGATGAAGTTAATtcccatctcttttttttttaggcaGAGCAATGTTGAGGACTTGAAGAAACTTGCAAAACAGTTTGACATCAGTATGACTCGCCAGGACAAAGAGAAGGCACAAGAGAGCAcagaaggaaaaaataaacttaataagCTACAAAGTGATGGTGCAATGACAATGCAGAGATCACCATCAATCCCAGTCTTGTCTGCAAAGCTAGAGGAAGAGGAGCAGGAGCTTCAGGCGCTGTTTGACGGTCCCACTCAGCATGTAAGTGGGAGACTGAGCCCACCATCAGTAAACTGCACTCCAGAAAACACAACTGAACCGGTAGCTCAGGTTGATCTGAGATCGAGTTGTGCATCTAAAACTACAAATTTTGACGATGACTGGGAAAATGACGACCTGCTAAATGACTCGTTTGTGTTAGAAATGACACATAATCCAGGTCCTATAAATGTACCTCAGAAACGAAGCACTGCTCTGCCTGAACCTTCcactttaaaatgccattttgtgACCAAGATTAATCAATCTAATGCCAGAAGCATCTGCACAGAGAGTCAACAGAGTACCAGTAAAAGCAGCACCTTTATCAAGACACTTCCCGAAGTCAATGCATCAAATCAAAGCACTTTTAGGCCGAAGCCATCCACTTCTGCCAAGAATCAAATTACTGAGAAGCTGCTAAAGACTGCGCCTGTGAACCAAGTAAACCAGCAAGCTTGTTCATCCCAGCATACAGGAAAAGCGGAGCTTGATGAAGCCTCCAAAAACAGCGGAGCTTCAAGCCAGGCCTCTTCTCAGTTTGATGGGGTTTCAGAAGAGGACATGAAGTCTCTATTTGATTCTGACGGTCTGTGGAATGATGAAGATGACGATCTGCTTTTCAAGGTTTGCGACGATGTGGAGAAGTTATCTGCCAGTCAGGAACAGCAAAAACTTGCACATGAGTCTATAAGCTCTGCCTCTAAAGCACCTTCCTCTTCCAACACCATTGGCCAATCACAAGCACCCACAAAGTCCATACGAGTCTTTGCTCGCTCAAATTCGGTACCATGCACAAGTGGAAGCTCTGGGTTTATTCTGGGATACAGTGTGTTACCAACTTCTGAAAGTTCCGGCTCTGGTTCAGGAAATCAGAGCGCTCAGCATTATGGGCATGCACAAAACAATTCAGACTTAGCACACAAGACTGGAGTCAGAGCCATGGGCTCTTCACAGACTGGAGGAAATACTTCTAAATCCCACCATTGCACGTTCAAGAGACATCTGTCAGACTCTATGACGCTCACCAACAAAGTTTTTATTTCTTCCCACTCGACACCCAAGTGTTCAGCTGCTGAGATAGAGAGGAAGAAACAGGAAGCCATTGCAAGGAGGAGATTACGGATGCAGGCCAGCcagaaaactggagcacctacgTAA
>TCONS_00013457
GAGCAGAACTTTTAAAGTTGCCCcgaagaaaatgaaaacaaagagaCACATGATCGGACTTAAACAGTCACAGTCTCCTTCTTGTTATAATTCGAACAACTGTCACAAAGATTTTACAACCCCAAAACGAAGACCAAGAGTCAGATTCAACGGTTCCTACGGTGGAGATTCGCCTAATGAGACTGAATCCCCGCAAGATATCATCTGGGATCCAAACTCACCCACGCAAGATTTGAATGG

Function

GO:

id name namespace
GO:0031297 replication fork processing biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0071902 positive regulation of protein serine/threonine kinase activity biological_process
GO:2000001 regulation of DNA damage checkpoint biological_process
GO:0043596 nuclear replication fork cellular_component
GO:0043539 protein serine/threonine kinase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081107-73 Predicted to enable protein serine/threonine kinase activator activity. Predicted to be involved in several processes, including positive regulation of protein serine/threonine kinase activity; regulation of DNA damage checkpoint; and replication fork processing. Predicted to be active in nuclear replication fork.

Ensembl:

ensembl_id ENSDARG00000078166

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012417 False 6017 mRNA 0.40 6 5243167 5257303
TCONS_00012418 False 1605 mRNA 0.43 2 5247389 5252559
TCONS_00013457 True 240 lncRNA 0.43 2 5255308 5257303

Neighbor

gene id symbol gene type direction distance location
XLOC_006398 slc29a3 coding downstream 163656 5069552 ~ 5079511 (-)
XLOC_006397 abcg2c coding downstream 177628 5031197 ~ 5065539 (-)
XLOC_006396 nolc1 coding downstream 250772 4973211 ~ 4992395 (-)
XLOC_006395 mcu coding downstream 394278 4722200 ~ 4848889 (-)
XLOC_006394 NA coding downstream 523774 4717790 ~ 4719393 (-)
XLOC_006400 NA coding upstream 103006 5360309 ~ 5365910 (-)
XLOC_006401 NA coding upstream 133194 5390497 ~ 5395920 (-)
XLOC_006402 NA coding upstream 206851 5464154 ~ 5471589 (-)
XLOC_006403 NA coding upstream 223684 5480987 ~ 5487613 (-)
XLOC_006404 meis1b coding upstream 233248 5490551 ~ 5569562 (-)
XLOC_006338 rn7sk misc downstream 4416942 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 5007438 10264741 ~ 10264905 (-)
XLOC_006393 CU856520.1 non-coding downstream 529061 4712421 ~ 4714106 (-)
XLOC_006390 CR854838.1 non-coding downstream 795514 4445553 ~ 4447653 (-)
XLOC_006389 NA non-coding downstream 834681 4407857 ~ 4408486 (-)
XLOC_006388 NA non-coding downstream 836095 4405292 ~ 4407072 (-)
XLOC_006405 CR926469.1 non-coding upstream 321794 5579097 ~ 5624415 (-)

Expression


Co-expression Network