XLOC_006406


Basic Information

Item Value
gene id XLOC_006406
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 5730915 ~ 5732497 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013743
agtgtgtgtgtggatgttttccagagataggttgcatctactgcataaaaactagctggataagttggcggttcattccgctgtggcgacccgggattaataaagggactaagccgacaagaaaattaatgaaaactatacgagtgacacgtcttgtgtatttcATAGTCTTTGTAACAACCCAACAACTGTCTCCTCCATTGTTGTTTGTTGTCAATTACACCCAATACCTCAGGCAGACGTAATCTAAgatttcaactgaaaaaaaaaatcaggaagtgcattttcagatttgtaaaagggcaaaaattgtgtttatttttttctcaatgacatgcacagatgaattgtttgcCAAAAATCTAATGTTatgctaacaaaatcaatatactTAGTATAATAACTGATTTCACTTGTActttaaggccacttaatataaagtaggactGTATTTTTTATGTCTTTTCTGCGACGCGGACAAGTTCCTGACAGTTTCAGTGCAATATTCACCAGCTCCATCTGAAGTTGACGGGGTCCCAGCATTAGCCCTCGGATCCTCTAGCACATGTGGCGGGAGGCTTCCGTGCCTCATTGCCTCCCCAGCATGGGTGACACAGTCTGCTGGCTCCGACTGACACCCTGATGTGTGGCTTCTGCTGCCCGAGCCAAACCGCAGGCTGCCAGGCCTGGAAGGAGACCAGGGCCAACCAACAGCTGGACCCGAGCTGCAGGCCCTGTCCCGGCTTCAGGCGATGAATCACTCACAATTAATATTTAACTCCGGCGGAGGCCTCCAGATCTCGGCGGTGCACCTGCAGGCATGCGCTCAGATCTCAGACGAGCTGCCGGATCAAAGCCGTAATGCTGGACTTTTGAAAACAGACGCCTGGATcacagaagcatttttttttttttcgagccACCCAGCTCCACATTTATATTCGATGCTAAAACAACATCTACTTCCCTACAGGCCTCCTGGTGGAGCAGCGGGCCAGCTGGGTAATGGAGTTTTCAGATGGGTCATTCCTGACGACTCTCAGCCGGTTAACTGTATGCGTTCCAGTGATTAGTACTCCAGCCTCCATCTCTCCTGTGACACACATATATAAGCCACGGTGGTTGTGATCGACGTACCCCGCTGGTTCTCGCTCATTTGCATCGGTGTATGTTGATCTGGAGCTGTTGGAAAGTACATAAAATCATACTTTATGGCTGGTTGTAAAAGTCTGGAAAGAAGCGTTGGATTTTAAAGGTGACGCATGTCATTTTTTCAATGTTAAAATACTTGCTCTTACCCTATTTAGTTTAATGTGTAGTCGCACACTGGTAATCAGTCTACAACAGGTTTTTATCAGGATCATAATTCATTTAGAATTACAAATTGAACaaccaagttaaaaaaaaaaatcacatcaatttttcactttag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013743 True 1432 lncRNA 0.44 2 5730915 5732497

Neighbor

gene id symbol gene type direction distance location
XLOC_006405 CR926469.1 coding downstream 106500 5579097 ~ 5624415 (-)
XLOC_006404 meis1b coding downstream 161353 5490551 ~ 5569562 (-)
XLOC_006403 NA coding downstream 243302 5480987 ~ 5487613 (-)
XLOC_006402 NA coding downstream 259326 5464154 ~ 5471589 (-)
XLOC_006401 NA coding downstream 334995 5390497 ~ 5395920 (-)
XLOC_006407 spred2b coding upstream 138147 5870644 ~ 5937034 (-)
XLOC_006408 actr2b coding upstream 214110 5946607 ~ 5978433 (-)
XLOC_006409 CABZ01033394.1 coding upstream 300347 6032844 ~ 6038477 (-)
XLOC_006410 dld coding upstream 343075 6075572 ~ 6081803 (-)
XLOC_006411 NA coding upstream 417724 6150221 ~ 6187744 (-)
XLOC_006338 rn7sk misc downstream 4904690 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 4532244 10264741 ~ 10264905 (-)
XLOC_006400 NA non-coding downstream 365005 5360309 ~ 5365910 (-)
XLOC_006412 CU984583.1 non-coding upstream 428084 6160581 ~ 6161564 (-)
XLOC_006417 NA non-coding upstream 602867 6335364 ~ 6338658 (-)
XLOC_006419 NA non-coding upstream 1421825 7154322 ~ 7154837 (-)
XLOC_006421 NA non-coding upstream 1536715 7269212 ~ 7322676 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000005_02492230_02501125 NA coding CI01000005 null 2491664 ~ 2501504 (+)