RNA id: TCONS_00012471


Basic Information

Item Value
RNA id TCONS_00012471
length 1516
RNA type mRNA
GC content 0.43
exon number 5
gene id XLOC_006442
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 9002575 ~ 9236954 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGACAAATGCCCATGTGGTCGCCAACAAGCGTGGTGTTCGTGTCAAACTGACCAATGGTGAGACTTACAGCGCCACAGTCCAGGATGTGGACCAGGCTGCAGACATCGCCACCATCAAAATCAATGTTAAGaatcctctaCCAACGTTGCGTCTTGGCAAGTCATCTGATGTGCGTCAAGGTGAATTTGAGGTTGCCATGGGGAGCCCCTTTTCTCTTAAAAACACCATCACATCTGGCATCGTCTCAGAGAGGCAGTAAAGAACTGGGTCTCTCCAACTCCAACATGGACTATATCCAGACGGACGCTACCATAGATGTAAGAGCATTGAAAACTGGGTGgtgttgcatgcaaaaaaaaaaagtatgtcatcatttactgaatTGCATTCCATCACTCAATCACAATTCTGCTTTACAGTTTGGAAATTCAGGAGGGCCTCTCATAAACCTGGATGGTGAGGTCATCGGCATTAATACCATGAAAGTGACAGCAGGGATTTCCTTCGCTATTCCTCTCTTTCTTGACCGATCTGCAGACAAACAGAAGTCTTGGTTTGGAGAATCGGAATCGAAAAGGCGTTACATTGGAGTGATGATGTTGACTTTGACCCCCAGTATAATCGAAGAGCTAAGGATGCGAGACCCGTCCTTCCCTGATGTTTCTCATGGAGTTCTCATCCACCGTGTGATTGTAGGATCTCCAGCCAACAGGTGTGCTGCTCTCTGAACATGATGTTATCAGCTGTTGATTAAGGCATCCTTTTgatgatgtcatttcctgttttctgttttgcagaGCTGGAATGAAGCCAGGAGATGTTATTATTGAGATCAATGGGGTAAAGGTGAACACGTCGGAGGAGATATATAATGCTGTGAGGACCAGCGAAAGCTTAAATGTGGTGGTCCGCCGGGGGGCCGACCTGCTCATGCTGCACATGACCCCAGAGTCCACAGAGTGACATCAAGTCAAGTATTTAGTAAGATTAAGAAATGGTGAGTAATGAGAAGCTGTCATAGTTGGAGATGTTGTAAGAAAGGAATCATCTAAAGAGTTGAACAGTTTTAGCAAACGCTGGACATTGGTGTAGTAAACGTGTTTCTGGAAGCGTATGAAATCATGTGGATGATTCAGACTTCTGTACACTGgataaacctcagtgtgtctgcGCAAACTACACTATCAGTATTGATTTGAAGGAATATCACTGAATATTTTGTTTAGGATTGTCATGATGGCAACAAACACTCAAAGACCTTAATAAAACTGGGTGCTCTTATTGTGAAAAtgctgatgttttgtattgagtctcacattctcatgttacgacgtttgtattttaatacatttttctgaacAGCTCTGATTTCACAATAAACCATTGGAATATTTATGGATGATTTGCTTATGTCGCAGTGACTGatatgtttaggttttgggtcagCGCTGTACAGCATTCTGAAAAAGTGTATTTCTAAAAGTGCGCCGTAATGACGCCAGTGTCAACTGCA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000164186

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012466 lncRNA downstream 220083 8781540 ~ 8782492 (-) True XLOC_006438
TCONS_00012465 lncRNA downstream 221005 8781046 ~ 8781570 (-) False XLOC_006438
TCONS_00012463 lncRNA downstream 226098 8760694 ~ 8776477 (-) False XLOC_006437
TCONS_00012453 lncRNA downstream 698096 8296326 ~ 8304479 (-) True XLOC_006430
TCONS_00012450 lncRNA downstream 772410 8168713 ~ 8230165 (-) True XLOC_006428
TCONS_00012518 lncRNA upstream 226896 9288840 ~ 9291568 (-) False XLOC_006449
TCONS_00012516 lncRNA upstream 226896 9288840 ~ 9291685 (-) False XLOC_006449
TCONS_00012524 lncRNA upstream 294145 9356089 ~ 9362323 (-) False XLOC_006453
TCONS_00013752 lncRNA upstream 294145 9356089 ~ 9367689 (-) False XLOC_006453
TCONS_00012527 lncRNA upstream 300044 9361988 ~ 9367041 (-) False XLOC_006453
TCONS_00012469 mRNA downstream 110061 8847421 ~ 8892514 (-) False XLOC_006441
TCONS_00012470 mRNA downstream 114241 8848426 ~ 8888334 (-) True XLOC_006441
TCONS_00012468 mRNA downstream 173183 8825192 ~ 8829392 (-) True XLOC_006440
TCONS_00012467 mRNA downstream 187045 8799168 ~ 8815530 (-) True XLOC_006439
TCONS_00012464 mRNA downstream 216965 8777633 ~ 8785610 (-) False XLOC_006438
TCONS_00012487 mRNA upstream 12853 9074797 ~ 9091354 (-) False XLOC_006444
TCONS_00012486 mRNA upstream 12853 9074797 ~ 9091354 (-) True XLOC_006444
TCONS_00012488 mRNA upstream 33446 9095390 ~ 9111927 (-) False XLOC_006442
TCONS_00012489 mRNA upstream 33446 9095390 ~ 9111930 (-) False XLOC_006442
TCONS_00012490 mRNA upstream 33449 9095393 ~ 9111927 (-) False XLOC_006442
TCONS_00012459 other downstream 347128 8655119 ~ 8655447 (-) True XLOC_006435
TCONS_00012458 other downstream 352524 8649711 ~ 8650051 (-) True XLOC_006434
TCONS_00012435 other downstream 2682417 6288544 ~ 6320158 (-) False XLOC_006416
TCONS_00012432 other downstream 2750061 6247987 ~ 6252514 (-) True XLOC_006414
TCONS_00012410 other downstream 4010190 4976175 ~ 4992385 (-) False XLOC_006396
TCONS_00012519 other upstream 233741 9295685 ~ 9300241 (-) True XLOC_006449
TCONS_00012525 other upstream 299866 9361810 ~ 9367689 (-) False XLOC_006453
TCONS_00012528 other upstream 300282 9362226 ~ 9368535 (-) True XLOC_006453
TCONS_00012530 other upstream 378384 9440328 ~ 9442332 (-) True XLOC_006454
TCONS_00012547 other upstream 1018083 10080027 ~ 10114880 (-) False XLOC_006467

Expression Profile

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