RNA id: TCONS_00012450


Basic Information

Item Value
RNA id TCONS_00012450
length 6079
lncRNA type inter_gene
GC content 0.40
exon number 8
gene id XLOC_006428
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 8168713 ~ 8230165 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTTCAAAGAGGTGCAAGAAACACTTTGGTATATGATTGCAAAATCCAGTTTCTTGCTTCTCCCActatctctccctctctctacACACATACAATGCTTTCTCAGGAGTGTTTCCCCTCCCTCCATCTGGCGATCCGTCACCCCTCCTCCAGCTGCTGATGGTCCTGCTGTAGGCATATTCTCCTCAGCTCACTCACTCCTTCACAACCAGCCACTCGTGTGTGAAACTGTCCTGACAATATGCTTAAACCTGGATATATCGCAAACAGCGCACCTTTCTGGAGCACTTCCACAATTTGAGCTCTCAGTTCAGGAGAAGGACAGTCAATCAACACTACAGCTATGAGCTGTGCTTGAATGACCCATTGAGGAGCATTTTTCCTTTTTGACACTGAACGCTGCTCAAGATTTAGACATCCATAATGAGTCTtaagaagaggaagccaagcatgGTGTTTAGCTGGCACAAGTCTTTCTCCATCCTTGCCCCGTGGAGAAAAGGCAAAGGGGATATTGTTTTAGAGAATGAAGTTGTCCTGACGAAAATGAAACTCCTCAACAACTTTCCTGAGAAACTCCTAAATGGTGAAGATTCCATTTCATCCATCTCCATTTCAATGTCTGAGCAGGAAAACACAGAGCCTCTCCAGGCTGACGACGTTATGTCCGTCCACAGTGTTGCTCCTGAAACAACAGTGCCTGAAACCAAAACAGACTATCTATGTTCGATATTTGCTGATTCTGGGCTTCCGAGATTGTACAAATTTGAATCTGAGGACTCTGGGGTAGAGATGACTAGTGGAGCAACTTCCCCATCCACCCCAACTGGTTCAGAGCAAAGCTTTGTGGTCCACAGCAGAGAGTCTTCATGCGACTCTGGCAACCTGAACTCTCCGTTATCTGCTGACAATCATCTCGAAGATAGTTCGGTCTTTTTGGAAACTGAACAAACGTCTTGTAAGTGCACTAAACAAGATTCTAATACCATTTTGGGAGATAGAACAGAGGATGAGAAAGCTGAGGACAACTTAATGGACATCATTACAGATTCAGAAAGGTCTGAGGATAGAGCCCTGAGGAATACCACAGAGAACTGTAAAACTACCACTGAAATCGCAACAGTACGAGAGGAAATAAACACTGCATTGGCTGATGACACCATGTCAAGGAGTTCTGCCGATCATTATGATGGCACGACAGGACCTGAATTTCAGCAATCGCCTTTGAGGAAAAGTACAACCAGCGACAGTCTGGATGAATATATGGAGGAGTGCTGCAGGTTAAGTGAGGTGAACCAGGCCTGTCAATCCAACCCACTGGGCTCTGGACTGGGATATCTAGAGCACATCTGCCAACTCATAGAGAAGATTGGACAGCTACAAGAACATAACCTCCGACTACAGAAACAGATCTGTGGCCTGCAGAAGGAAGGAAGGGTGATCAAGACTAAAGAGGACTTTTTCATGCAGCACTGTAGCTGTGGAGCAGCTGGTTTGGCCTTTCAAGAGCTGAAAAGACACTTTCGCAGTGACCACTACAGCCCAACGGCATCGAACGGCACGCTGTCTGACCTCACCACAATCCCGGAGGTCACGCGCATCCCCCTCAGGGCAGCCATGAGAGATGGGGAGATGGGCTGCCAACCTCTGCCCATTTGGAGGAGGGGCTTGAATCGCAGGAGTTACACAGAGGGAGAGGCCAAATACCTGAGCGACAGCGCTGAGGTGCTCTCTGCTCCTCACAGACGGCTGAGTGAGAACTATACTTGGGGAAGAGTAAAGGATCTGGTAAAGAAGACCAAACTGAGGAACCAAAGCCGACTGGGACTGTCTTCAGGCTCCTTGAAAAGATCATGTCCTCAACTTTACCGCCCAGAAGTGATGTCAGCAGAGCGACCCAGGACAAACAGAAACTCCATGATCACTCTGGGCCATCAGAAATTGGACTATCTGTGGACACCGTAGTATTAATCAGACATTGAGCAGATGGCCTGCGATGGAGCAGCTTTTCCACGAAAGcaatggaagttttttttttgcagctagCAGATGGTTTTTCCAGACTGAAGAACGAAATGGGAGAGAAATGTACAAGGATGTGATGAACAGGATTTAAGTAATGATGGAAATAATGTTGGCATTGTGTATACGTTGATAAAAGTGATAAGTTGATGGAGATTAACAACTCATTAGATTTGTCAGCTAACGACGTACTATGTAAACAAAGATTACAATTTGTGATTTCAGACAAAATGAATTCTTATGTCATGTAAATATGTTCCTGGGACAATTTTCCAGATGTTTCAGAATTGTAAAATACTTGAATTACAgacaaataataacaaatgttgAAGATGCATGCTCTAACTTTATATAGATCATTTTGTACCACTATTATAAGAATTCCATGTGTAAGTGTGTAAATACAGACTGtaacaaatgtgtatatatatttccaTGAAGCATGGATCATGTGCAGATGAGAGTGGAAGAAGGGCGCTCCCACGCCTGAATTCCTGCAAACGTATATTGCTGTTATGGCGGGGCTTATGATAACACGTAAATTATAGCATGTACAGCAGTTCTGTATGCTGCTTGCCTGTCTGATGTTATATAACATGTGTGACCTTTCGCCTCCTAAAAAGTTAAGCAATGGCCGGAGTATGAACctgaaacatttttattcatttaaatgtattataaactGTGTATTATCAAGTGCTTCCTATCCTGTGTGTCTGCCAAAACAAAAATCAGTTGAAAACAAAAAGGATTTCAATTGACCTTTCGCTAAGCCCCACCCTTCTTAGCTGCTGTTGTtatgcctgtcaagctttcgtgcctcgCACGTCTATTACATTATGtatgcgccggtgtcagacattcccaggaatataattagtcatttttcaCAAACAGGTGAATTATccaagaaagccagacaaaaaaggactggaGTGTGTATTACAGCGGTATATTCATGACATAATAAGCAACCTATTAGAaaattaggtcccactttatattaagtgtccttaactactatgtacttacatcaaaaataattacaatgtacttactgtgttcataaagtattTGAGAGCACTtttggtgctcttgagttgggataggggttgggttagggacaggtttggtggtgtgggtaggtttaagggtgggttaaggtgtagggaatggtcagcagtgtatttacaaatgtaattatagaagttaattacagatgtaattacatacagatatttaatcaagcataagtacacaataaatacatgtatttacacaataagtacattgtaacaaactaattattcctgtgtaagtacatattagttaaggccacttaatataaagtgggaccgaaaattATTTCATCAGAATTGaagcctagccacctcatacgctgaccattcaacagcttagttcccGCACAGCAGGATAggtgaattttaaaaaataatctaacatCAAATTAAACcctgatttctctctctctttttttttttagccaaaaagcctgatagattaattgttttGCAATGAAATATAGTTACTAACCGAcaaggaaacacgcatggacagtgcttctacataattaGTTCATAGAAAGAACTGCCAGAAAGGGGTAATCGATGGATTtgtgctgaatattagcatcattgacccataacaatgtacattGTACAATATCTATTACTGTCAGTATTTGGTGtgctttttatacagtttctattctaatttgcagttaagtgtaaaaaaataaataaattgaaaagcaaatcaaagtataaatagcagaagtgaacaaatagattttccctaccagcaaatattaatccgcCACCAagtataaaagcagacactaacccgcTATAACGTCttcaccaatgactaaatctcaaAAAAATCTCTGTAAACATCAGTaaattgtagctctgacatggacatgagggttataaatgactgaaaaacagctgtggGTGAAGTATGTTGATTGCAAGTGCTCAATTTGTGATcacatctcggttttgttctgttgtaatttcaaatattcgtagcttgaaacagatggaaacatgactgctattagtatgaccactattgcgagggcttaaacggagcagtgctcataatatcgagcgaaaaaagaaaaagacagctgggaaacataacctgctttgtatttatgtagaaaacaatttagatctttttagggtacgaggattttgagttattgttgtctatcactaaatgtgtcaggaatatcgaaaacaaaacatACGCAATGTAACCCCGCTCTTCACACAGCTTggtccacgctggcatttctccccttgggttttaggttttggaaaGGGAAAAAAATTCCACGACCCCGTCCAAACTTTAGGGATAcggggtgtcagatttgcacaatccatatgcacaatgcTTTatcttgtttccctcgctcgaaagcttgacagaccttCTGTGTGTAGCTACGGCTGCAAAGCCATGATTAATCTGTGgcagtttttgggtgtggcttagcgaaaggtcaattaaaattaaatgcattataCAGTAATCTATCTCATCTGAGCTTGATTATTTATTTCAACAATGCCCAGGTTTAAATATCCGCTGCAAATCCAACATACTAGAAGAACtcatatagtaaaataaaatacataaaggtttaaaaatgatcaacaaatgaaaaaaaaaatttaaatggttCGAAATGTATAAAACTTTACTAAGTATAATGTGGACCTCAgggataaaataaaatgaataaataaaagttacaaaattaaccctttaaatcaGTGGCCTTTAACCTTTTTATCACTGTGGAACGGTCAGCACTTGACTGAAGGAGTGTGGgggtttgtatgttttttttttctcattgctgcagctctgatacaagttttattaatggaaaaaattacaaagcactgcagtgtttgggtgttctgtgtttgtctaagaTAATTAGTCTATCAAAATGTGTaaattccatacaagctgaagctgatcactcaattcttgtcatgtgactcgcggTGCGCTCATGGGATTCGTTCACTTGGAGCGTCTGGAAAGTGCGAGCGCGTCCCATCACTTGTGcgtgcacctccattggaaaaaacaaacttgcgcaaactctagaaaagacgcgatatgtgaacagcccctaaAAAGGTCACTGTTATTTGCAATCTCCAttagttgatcttcttgcacagccatggtggattcacctgatttgttgacaaatgtgttgcggatccattccttggcagttcgtgggtccttcactgggccttttccccttagcaaagaaacttttcaaagaAGTCTGTCTCTTACTCATTTtactgcttgtgggttaaatttgagTGAGCAAGATGTAATCacagacatttttcaaaataaaacacttttcaaaataaaaatcgtTCAGAGccagataaaaaataaaactgaaaaaatgtatgatttcttgtgtggcccagtgccaattgatccatggaccggcctggtggttgaggaccactgctttaAATCGATACAGTATTTAAATGCAGGAGATTTATCATACTTGGTGTTGTTACTGATtcacagtaaaaacagtatacaTGACAACATTAAGTTAAGCTCAGAAATGACCACTGGCATGTAACTGTCTTTGTTGACAGCTGACTGAGTGAGGTACTAAAATACTGCTGTCTTTAAGGACTTTTCTCAAACCTCTTCCGGTCTTCTTTGTAAAAGATAAAACATCAATTTTGAAatatcaattttttaaataaactttgtaACACAGTATTGTACTATCCaggaaagtgttttaaaacacaaacaatctCCAGCATGGTCATTTGATGTTTGCCTGACCTATCGTTTCATAGCCGCTCTTTCGAGTATTGATGTTGCTCAGTGTCAAGACAAAAGATTTGTACTTATCTTGTGTATTGTCGTGTATCAAAATTGATGGAATAATTCATTATGCATATTGCATtgttattcaaatgtattttagttaataaaatatgatatttctACATC

Function

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0007276 gamete generation biological_process
GO:0061028 establishment of endothelial barrier biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013750 lncRNA downstream 419512 7747111 ~ 7749201 (-) True XLOC_006426
TCONS_00013749 lncRNA downstream 781921 7368997 ~ 7386792 (-) False XLOC_006423
TCONS_00013748 lncRNA downstream 798495 7368997 ~ 7370218 (-) False XLOC_006423
TCONS_00013746 lncRNA downstream 846037 7269212 ~ 7322676 (-) True XLOC_006421
TCONS_00013747 lncRNA downstream 851774 7305415 ~ 7316939 (-) True XLOC_006422
TCONS_00012453 lncRNA upstream 66161 8296326 ~ 8304479 (-) True XLOC_006430
TCONS_00012463 lncRNA upstream 530529 8760694 ~ 8776477 (-) False XLOC_006437
TCONS_00012465 lncRNA upstream 550881 8781046 ~ 8781570 (-) False XLOC_006438
TCONS_00012466 lncRNA upstream 551375 8781540 ~ 8782492 (-) True XLOC_006438
TCONS_00013751 lncRNA upstream 772517 9002682 ~ 9006597 (-) False XLOC_006442
TCONS_00012446 mRNA downstream 401113 7753049 ~ 7767600 (-) False XLOC_006427
TCONS_00012449 mRNA downstream 401165 7763795 ~ 7767548 (-) True XLOC_006427
TCONS_00012448 mRNA downstream 401669 7758172 ~ 7767044 (-) False XLOC_006427
TCONS_00012447 mRNA downstream 401955 7758145 ~ 7766758 (-) False XLOC_006427
TCONS_00012445 mRNA downstream 593497 7557110 ~ 7575216 (-) True XLOC_006425
TCONS_00012451 mRNA upstream 41878 8272043 ~ 8279533 (-) True XLOC_006429
TCONS_00012452 mRNA upstream 51058 8281223 ~ 8304605 (-) False XLOC_006430
TCONS_00012454 mRNA upstream 90290 8320455 ~ 8353515 (-) False XLOC_006431
TCONS_00012455 mRNA upstream 90713 8320878 ~ 8353560 (-) True XLOC_006431
TCONS_00012456 mRNA upstream 145447 8375612 ~ 8446341 (-) True XLOC_006432
TCONS_00012435 other downstream 1848555 6288544 ~ 6320158 (-) False XLOC_006416
TCONS_00012432 other downstream 1916199 6247987 ~ 6252514 (-) True XLOC_006414
TCONS_00012410 other downstream 3176328 4976175 ~ 4992385 (-) False XLOC_006396
TCONS_00012397 other downstream 3860047 4307685 ~ 4308666 (-) True XLOC_006386
TCONS_00012394 other downstream 3944758 4218329 ~ 4223955 (-) False XLOC_006384
TCONS_00012458 other upstream 419546 8649711 ~ 8650051 (-) True XLOC_006434
TCONS_00012459 other upstream 424954 8655119 ~ 8655447 (-) True XLOC_006435
TCONS_00012477 other upstream 772962 9003127 ~ 9009241 (-) False XLOC_006442
TCONS_00012519 other upstream 1065520 9295685 ~ 9300241 (-) True XLOC_006449
TCONS_00012525 other upstream 1131645 9361810 ~ 9367689 (-) False XLOC_006453

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01180000_07379273_07380075.mRNA True 873 mRNA 0.42 1 CI01180000 7379203 ~ 7380075 (-)
bowfin (Amia calva) AMCG00003107 True 3908 mRNA 0.43 8 CM030139.1 11571865 ~ 11600042 (+)