RNA id: TCONS_00012448


Basic Information

Item Value
RNA id TCONS_00012448
length 897
RNA type mRNA
GC content 0.50
exon number 7
gene id XLOC_006427
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 7753049 ~ 7767600 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCAGTAGCCTAAAGCCTGCCTCCATCGACAGCACGGTGGTACTGGCTGCTGTAGTTTTTCgcggtctctctctctctatttttttttaaggaacaGCAGACAGGATCGGCGCACAAGGACAGGGAAGACCAGGAACTCCTCCTTATTTGCGCCTGTCAGAAGACAGATATATGTCGTACATGACGCATTTGTAGAAAACAAACAGGTACTCCATCCAGTGGCACTGTGAGTCTAGAGGAGCAAAGGCAGGATGTCAGCCAGAGGAGGAAAGAAAAAGATCACCAAGCTGTCCCGTTCCGCCCGGGCGGGAGTCATTTTTCCTGTGGGGAGAATGATGCGTTACTTGCGCACAGGAACCCATAAGTATCGTATTGGCATGGGCGCCCCCGTCTACATGGCAGCTGTCATTGAGTACTTAGCAGCTGAGATTTTGGAGTTGGCTGGAAATGCAGCAAGAGACAACAAAAAAGGGAGAATTACTCCACGACACATCAAGCTGGCAGTGGCCAATGATGAAGAACTCAACCAGCTTCTCAGAGGAGTGACCATATCGAATGGTGGAGTTCTGCCTCGCATTCACCCTGAGCTGCTCTCCAAGAAGAGAGGAGGCAAGGTGAAGGTGGAGTCTCAGGTCGCCGTTCCGGAGAAGAGCGCCAAACGGAAACCCGTCAAGAAACCCTACAAAAAGAGCAAAGGAAAACCAGGCCGCAAACCCAAAAAAAGCACAGAGAACGACAAAGAAGCAGATGCCAACGCGATGGAAGACGGACCAGGAGAGGGATTTACTATCCTCTCAGCGAAAAGCTTGTTCCTTGGACAGAAGCTGTCCCTCACAGAGAGTGAAATCAGCAAAATCGGGACGATCAAAGTGGAGGGAATCATCAATCCCACAAACG

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0006334 nucleosome assembly biological_process
GO:0006342 chromatin silencing biological_process
GO:0007420 brain development biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0031490 chromatin DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-114 Enables transcription cis-regulatory region binding activity. Involved in brain development. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome. Is expressed in brain; central nervous system; retina; and retinal ganglion cell layer. Orthologous to human MACROH2A2 (macroH2A.2 histone).

Ensembl:

ensembl_id ENSDART00000159453

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013750 lncRNA downstream 8971 7747111 ~ 7749201 (-) True XLOC_006426
TCONS_00013749 lncRNA downstream 371380 7368997 ~ 7386792 (-) False XLOC_006423
TCONS_00013748 lncRNA downstream 387954 7368997 ~ 7370218 (-) False XLOC_006423
TCONS_00013746 lncRNA downstream 435496 7269212 ~ 7322676 (-) True XLOC_006421
TCONS_00012450 lncRNA upstream 401669 8168713 ~ 8230165 (-) True XLOC_006428
TCONS_00012453 lncRNA upstream 529282 8296326 ~ 8304479 (-) True XLOC_006430
TCONS_00012463 lncRNA upstream 993650 8760694 ~ 8776477 (-) False XLOC_006437
TCONS_00012465 lncRNA upstream 1014002 8781046 ~ 8781570 (-) False XLOC_006438
TCONS_00012466 lncRNA upstream 1014496 8781540 ~ 8782492 (-) True XLOC_006438
TCONS_00012445 mRNA downstream 182956 7557110 ~ 7575216 (-) True XLOC_006425
TCONS_00012444 mRNA downstream 184502 7556312 ~ 7573670 (-) False XLOC_006425
TCONS_00012443 mRNA downstream 190444 7555720 ~ 7567728 (-) False XLOC_006425
TCONS_00012442 mRNA downstream 283848 7462715 ~ 7474324 (-) True XLOC_006424
TCONS_00012441 mRNA downstream 325457 7372117 ~ 7432715 (-) True XLOC_006423
TCONS_00012451 mRNA upstream 504999 8272043 ~ 8279533 (-) True XLOC_006429
TCONS_00012452 mRNA upstream 514179 8281223 ~ 8304605 (-) False XLOC_006430
TCONS_00012454 mRNA upstream 553411 8320455 ~ 8353515 (-) False XLOC_006431
TCONS_00012455 mRNA upstream 553834 8320878 ~ 8353560 (-) True XLOC_006431
TCONS_00012456 mRNA upstream 608568 8375612 ~ 8446341 (-) True XLOC_006432
TCONS_00012435 other downstream 1438014 6288544 ~ 6320158 (-) False XLOC_006416
TCONS_00012432 other downstream 1505658 6247987 ~ 6252514 (-) True XLOC_006414
TCONS_00012410 other downstream 2765787 4976175 ~ 4992385 (-) False XLOC_006396
TCONS_00012397 other downstream 3449506 4307685 ~ 4308666 (-) True XLOC_006386
TCONS_00012394 other downstream 3534217 4218329 ~ 4223955 (-) False XLOC_006384
TCONS_00012458 other upstream 882667 8649711 ~ 8650051 (-) True XLOC_006434
TCONS_00012459 other upstream 888075 8655119 ~ 8655447 (-) True XLOC_006435
TCONS_00012477 other upstream 1236083 9003127 ~ 9009241 (-) False XLOC_006442
TCONS_00012519 other upstream 1528641 9295685 ~ 9300241 (-) True XLOC_006449
TCONS_00012525 other upstream 1594766 9361810 ~ 9367689 (-) False XLOC_006453

Expression Profile

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