XLOC_006431 (dhx57)


Basic Information

Item Value
gene id XLOC_006431
gene name dhx57
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 8320455 ~ 8353560 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012454
GTATGTTTCCTGTTGAAGCACTCCACTTGCTGCAAAATTCCACCTTTCATTTTTACAATCATACCAAAGTAGCTGTAACTGTACAGCAAGAGATTCGTGTATAACTTCAATTTGTTTTGAAGTGCTTCAAAACACTTGATTTATGTGATTCATGGATGCTCTAAAAGGTAGCTGAAGTCATGAGTGGAAGGAGAAGGAGCAAACCCAATCGGGGTGGTGGTCGGTTTAATAAACCCAGGGGAGGTagaggaggaggtggtggaggTGGAGGTGGAGGTGGAGGCAAGAAATTTGCCAGTGGAGGCTGGGATGATGGAGATGATTTCAGCCTGGATTTTGGTCCCAGTCGCTCATTCAAGCCTCCCTCCTCTAGAGGTTCAAGAGGTGGAGGTGTCCGCGGGGCTCAGGGTGGAAGAGGCAGAGGAAGATCTCTGGGACTACCTAGAAAACACGATGATGACGAGGAGAAGAGATCCAGGTTTAGATCAGAACAAGTGCCTCTTCCCTTGCAGAAGATTCACATGACGTCAGAGAACAAACTACAGGTCAAAGAACTTCTTCGGGAACTTCAGAATCAGGAGTATCAAACCCCTAACAGTGGCTCTGATTATGAAGGTGGAGAGGAGGAAGAGGATGAGGAGTATGATGAGCTGGACCATCGAGAGGAAGGTCAGTACTGGATAACCCATGATGATGGAGTAGAATATGCGGAGACTGATGACTGGATGGAAGACCCTGTTGAGGAAAAGCACAAAAAACCCGAACCGGTGATCTCCCTGTTTGCTCTTGGAACTCTGTGCAGGTATGGGTTTGACCGTGAGCGCAGCAGACAAACTTTGGAAGCCGGAGAAGGAAGTGGATGCGGTGAGGTTGGAGCAACATTAGAGCTCCTCCTATCCCAAATGTTTACAGAACGATTTGGCTCTAGCGCCCTCAGCCCGCAAACATCTGATCCCCCTTCACAGGGGGAATGTGTAGCTTTGCGACAGGAAGAGGCCTTTGCTTTGACGGCAATCTACGGCGAAAGGTTCTGCGAGCGCATCAGTAATCGGGTTTGGACTATTCAGCTTGATTTGCTGTGGTTGGATGAAAGACGGATCAAACTTTCTGACTCTAAGCATTCTAAAAAGCAGTCAGAGTCCAATCAGATTTGCAAGTTTTACTTAAGGGGGGCAGGTTGTAAGTTTGGGAATCGCTGCAAGTTCAAGCACCAAGTTCACGAATCAAGCACTTCAAGAGATCTTTGTAAGGCAAGTCAACCGGGGTTTAGCAACGCAGATGCTCCAATTTACCAGCTGGAGATTCGTTTCCAACCAGGCAGTTTATATCCTTTTCAACCTCCACTTGTGGCCTTCAGTAGTACAGATGAATCCCTCTCAGGGGCTGGACGTCTCAGTGTCACAGAGTATCTGTTCGGTCAGTCACTCAGTGCTGCAGAGGAAGGTGAGCCAGTGGTCTACACCCTTATTTCCAGCCTGGAAGAGGATGGTCCTGTCAGGGAGCTGCTGTCAGCTGCTCATCACAAGTATAGTGCCCCACCTCCTGTGCTGGCTCCTCCCACTGTCACACCGGCAAAGAGTCGAAGCAATAAAAACAATGTAGACAACAGGACTTCAGCAACTAGAGATCAGTCAACCTCAACTAGCATCAGCGAGATCACGAACCACAGAGTGAAACAAAAAGAAGTTGCACAAATCCTAAGTGAGGATATTGATGATGTACAAGATGAAggggatgatgaagatgaagaggaATGTATCCCAGTAGAAAACGAGAGCTATGTTAACTTGAGGAAGAGGATGGTGAAGAAGACTGAAATCAGAACTGAGCAAATGCAGGAAGAGAACAAGAAGCTGTGCAGAGAGTTCAAAAGGAAACGGTCATCGAGGCGATACATATCAATGCAAGAGCAGAGGCAGAAACTCCCAGCATGGCAGAAGAGAGAGGCCATATTGGAGTGTTTGGTTAAGAATCAGGTTCTGGTTATCAGTGGGATGACCGGGTGTGGGAAAACCACTCAGATTCCTCAGTTTATCTTGGATAATTTCCTCCAGACTGGACGGCCGGATAGAGTAGCCAACATTATTTGCACTCAGCCACGCAGAATCTCTGCCATTGCTGTTGCAACTCGAGTGGCTCAGGAGCGAGCAGAGGCCCTGGGGCACTCCACAGGCTACCAGATCCGCCTGGAGACCGTCAGGTCCTCTATCACCAGGCTGATGTTCTGCACAACTGGTGTTCTTTTGAGGAGGTTAGAAGGTGATCCTGAGCTCAGCGGTGTCACACATGTGATCGTGGATGAGGTCCATGAACGAACAGAAGAGAGTGACTTCCTGTTGCTGGTTTTGAAGGATCTGATTGTAAAAAGGACAGATCTGAAAGTAATTATGATGAGTGCAACCTTGAATGCTGAACTGTTCTCACAGTATTTCAACAACTGCCCCTGCATCCATATACCAGGGCGTACTTTCCCAGTAGAGCAGTTCTTCCTTGAAGATGCCATTGCCAAGACCAGGTATGTAATTGAAGATGGCAGTCCATACCGGCGCTCCACAAAGCTAAATCGTTCCTCCGGTCCGGGTGGTACAACTGGAAAGGGACGAGCTCTAGTTGAAGACTTTGATGATGATTATGGTGGCTGGTCCTTCACCTCCTTCAGAAATAAGGAGTCCGTCAAAGACTCAGTTCCTGATCAGCAGCTCAGTCAACAAGATCTCACTGTCCGATATTCCAATTATTCAAAGTCTGTGGTGAAAACATTGGCTGCTATGGATCTTGACAAAATCAACATGGACCTGGTGGAGAGTCTGTTGGAGTGGATTGTTGATGGAGACCACAGCTACCCTCCAGGGGCTGTTTTGGTCTTTCTACCAGGCCTGGCTGAAATAAAGCAATTATATGAGCAGCTGCAGTCTAACAGGATGTTCAATAATAGAAGAACAAACAGGTGTGTAGTCTATCCTCTCCACTCGTCCCTGTCCAATGAGGAGCAGCAGGCTGTGTTTACCCGCCCACAGAATGGTGTTACCAAAATCATCATTTCCACAAACATTGCTGAAACTTCTGTCACCATTGATGATGTGGTGTATGTCATAGACTCTGGACGGATGAAAGAGAAAAGGTATGATGCCAGTCGCAGTATGGAGAGTCTAGAAGATGTGTGGGTGTCTCGTGCCAATGCTCTTCAGAGAAAAGGCCGTGCTGGTCGTGTGGCATCAGGGGTTTGCTTTCATCTGTTTACAAGCCATCGCTTTGAACACCATCTGAGCCAACAGCAGCTGCCGGAGATCCAGAGAGTTCCTCTGGAGCAGCTCTGTCTACGGGTTAAGGTGCTGGAGGTGTTTGCTGAGCGTCCTCTGGACTCTGTTTTCTCTCAGCTGATTGAGCCGCCCACAGAAGGCAGTCTGGAAGCAGCTAAACAGCGCCTGTGTGCCCTTGGTGCCCTGACAGATGAGGAGTCTCTAACTCCACTGGGCTGGCATTTGGCCTGTCTGCCAGTGGACGTGCGAATTGGTAAACTCATGCTGCTGGGAGCCATCTTCCGCTGCCTCGACCCTGCCCTCACCATTGCTGCCAGCCTGGCCTTCAAGAGTCCATTCGTGTCTCCATGGGATAAACGAGAAGAAGCTAATGAGAAGAAGTTGGCTTTCTCTCTTGCGAACAGTGACCATCTAGCTTTGATGCAGGCGTACAAGGGTTGGTGTAACGCAGCTCAGAGCGGCTTTAAGGCTGGATATCAGTATTGCAGAGAAAACTTCCTTTCAATCCGAGGATTACAGGAAATAGCATGTCTTAAAAGGCAGTTTGCTGAGCTCCTGTCTGACATTGGCTTTGTGAAGGATGGACTAAAGGCCAGGGTCATTGAAAAAATGAGCTCAAAGGGAAGTGATGGGGTGCTGGAGGCTACAGGCTATGAGGCCAACCTGAACTCCGACAACACAAAGCTGATGTCAGCCATGCTGTGTGCAGCCCTCTACCCTAATGTAGTCCAGGTGAGATCTCCCCAGATGAAGTATAAGCTCACTAGCAAAGGAGCTATGAAGATGCAGCCCAAAGCAGAGGAGCAGCGCTTCATGACCAAGAGCGATGGAGCTGTCCACATTCATCCCTCATCTGTCAACTTCTCGGTGCGCCACTATGACAGTCCGTACCTTGTGTACCATGAAAAAGTGAAGACCAGTCGAGTGTTTATCCGTGACTGTAGCATGGTCTGTGTGTATCCCATGGTGCTGTTCGGTGGGGGACAAGTGAATGTGGAACTGCAGCGTGGACAGTTCATCATCTCTCTGGATGATGGCTGGATCAAATTTGCTGCTGCATCTCATGagGTAGCTGAGCTGGTGAAAGAGCTGCGATGGGAGCTGGATCAGCTTTTAGAAGAGAAGATCAAAAATCCCAGTATGGATCTGATCAGCTGTCCTAGAGGATCTCGCATCATACACACAATTGTGTCACTTATTTCAACACAGTAACGGTTTGTCAACCAAATACAGAGGGGATGTTCACCTGAATACCTTATAACACGAGTTCAAGATTTTGTTGACGTTCATTTTAGGTTCATTTTCTTTCACAGACTAGTTTGTAGAGTTTTGATATTGTGTGATTCTACACAAACAGGATCTGAATCAGAGTCCACATTGGACTGCTTTCAATAAATAtctatattgaaaaaaattctaACAGAAAGCATGTGCATGAATCTTGAATGTATGGCTGAGAGGAATATGAACGCacttattgttaaatattataaaaggCAATGGTGTTTTGAATTCGTAACTTCTATGATGATGATGTGGGACTACTACTATAGCTTTGATAATGCATTATCAAAGGTATTgaacataaaatgtcaaaatgtgtgtaattatttaaaaataaaccattttaCTCCA
>TCONS_00012455
taaagctTTTATTTTGTAACAAAACACCTTTATTTTGAAAGCGAAGTATGTTTCCTGTTGAAGCACTCCACTTGCTGCAAAATTCCACCTTTCATTTTTACAATCATACCAAAGTAGCTGTAACTGTACAGCAAGAGATTCGTGTATAACTTCAATTTGTTTTGTGAGTTGGGTTTCATTGTCAATTACCATTATAAGTTGAACTGCTGTTGTACTTGTAACGTTAGTCTGCCGGTAATGTACTAACGTGACCGTTTAAACGTCATCATAACTCATAACACGTTGAGTCACTGTGTTTTCACGTTTGAACATTTGTTTATGCTTGCAATCTTCATCAACATAAAATCAAGGCAGATAAGAAATTCAAATGAGAAACATATTCTAAATTGTTAAAAAGCTGCTTTTGTACATAATGTTTTTCAGGAAGTGCTTCAAAACACTTGATTTATGTGATTCATGGATGCTCTAAAAGGTAGCTGAAGTCATGAGTGGAAGGAGAAGGAGCAAACCCAATCGGGGTGGTGGTCGGTTTAATAAACCCAGGGGAGGTagaggaggaggtggtggaggTGGAGGTGGAGGTGGAGGCAAGAAATTTGCCAGTGGAGGCTGGGATGATGGAGATGATTTCAGCCTGGATTTTGGTCCCAGTCGCTCATTCAAGCCTCCCTCCTCTAGAGGTTCAAGAGGTGGAGGTGTCCGCGGGGCTCAGGGTGGAAGAGGCAGAGGAAGATCTCTGGGACTACCTAGAAAACACGATGATGACGAGGAGAAGAGATCCAGGTTTAGATCAGAACAAGTGCCTCTTCCCTTGCAGAAGATTCACATGACGTCAGAGAACAAACTACAGGTCAAAGAACTTCTTCGGGAACTTCAGAATCAGGAGTATCAAACCCCTAACAGTGGCTCTGATTATGAAGGTGGAGAGGAGGAAGAGGATGAGGAGTATGATGAGCTGGACCATCGAGAGGAAGGTCAGTACTGGATAACCCATGATGATGGAGTAGAATATGCGGAGACTGATGACTGGATGGAAGACCCTGTTGAGGAAAAGCACAAAAAACCCGAACCGGTGATCTCCCTGTTTGCTCTTGGAACTCTGTGCAGGTATGGGTTTGACCGTGAGCGCAGCAGACAAACTTTGGAAGCCGGAGAAGGAAGTGGATGCGGTGAGGTTGGAGCAACATTAGAGCTCCTCCTATCCCAAATGTTTACAGAACGATTTGGCTCTAGCGCCCTCAGCCCGCAAACATCTGATCCCCCTTCACAGGGGGAATGTGTAGCTTTGCGACAGGAAGAGGCCTTTGCTTTGACGGCAATCTACGGCGAAAGGTTCTGCGAGCGCATCAGTAATCGGGTTTGGACTATTCAGCTTGATTTGCTGTGGTTGGATGAAAGACGGATCAAACTTTCTGACTCTAAGCATTCTAAAAAGCAGTCAGAGTCCAATCAGATTTGCAAGTTTTACTTAAGGGGGGCAGGTTGTAAGTTTGGGAATCGCTGCAAGTTCAAGCACCAAGTTCACGAATCAAGCACTTCAAGAGATCTTTGTAAGGCAAGTCAACCGGGGTTTAGCAACGCAGATGCTCCAATTTACCAGCTGGAGATTCGTTTCCAACCAGGCAGTTTATATCCTTTTCAACCTCCACTTGTGGCCTTCAGTAGTACAGATGAATCCCTCTCAGGGGCTGGACGTCTCAGTGTCACAGAGTATCTGTTCGGTCAGTCACTCAGTGCTGCAGAGGAAGGTGAGCCAGTGGTCTACACCCTTATTTCCAGCCTGGAAGAGGATGGTCCTGTCAGGGAGCTGCTGTCAGCTGCTCATCACAAGTATAGTGCCCCACCTCCTGTGCTGGCTCCTCCCACTGTCACACCGGCAAAGAGTCGAAGCAATAAAAACAATGTAGACAACAGGACTTCAGCAACTAGAGATCAGTCAACCTCAACTAGCATCAGCGAGATCACGAACCACAGAGTGAAACAAAAAGAAGTTGCACAAATCCTAAGTGAGGATATTGATGATGTACAAGATGAAggggatgatgaagatgaagaggaATGTATCCCAGTAGAAAACGAGAGCTATGTTAACTTGAGGAAGAGGATGGTGAAGAAGACTGAAATCAGAACTGAGCAAATGCAGGAAGAGAACAAGAAGCTGTGCAGAGAGTTCAAAAGGAAACGGTCATCGAGGCGATACATATCAATGCAAGAGCAGAGGCAGAAACTCCCAGCATGGCAGAAGAGAGAGGCCATATTGGAGTGTTTGGTTAAGAATCAGGTTCTGGTTATCAGTGGGATGACCGGGTGTGGGAAAACCACTCAGATTCCTCAGTTTATCTTGGATAATTTCCTCCAGACTGGACGGCCGGATAGAGTAGCCAACATTATTTGCACTCAGCCACGCAGAATCTCTGCCATTGCTGTTGCAACTCGAGTGGCTCAGGAGCGAGCAGAGGCCCTGGGGCACTCCACAGGCTACCAGATCCGCCTGGAGACCGTCAGGTCCTCTATCACCAGGCTGATGTTCTGCACAACTGGTGTTCTTTTGAGGAGGTTAGAAGGTGATCCTGAGCTCAGCGGTGTCACACATGTGATCGTGGATGAGGTCCATGAACGAACAGAAGAGAGTGACTTCCTGTTGCTGGTTTTGAAGGATCTGATTGTAAAAAGGACAGATCTGAAAGTAATTATGATGAGTGCAACCTTGAATGCTGAACTGTTCTCACAGTATTTCAACAACTGCCCCTGCATCCATATACCAGGGCGTACTTTCCCAGTAGAGCAGTTCTTCCTTGAAGATGCCATTGCCAAGACCAGGTATGTAATTGAAGATGGCAGTCCATACCGGCGCTCCACAAAGCTAAATCGTTCCTCCGGTCCGGGTGGTACAACTGGAAAGGGACGAGCTCTAGTTGAAGACTTTGATGATGATTATGGTGGCTGGTCCTTCACCTCCTTCAGAAATAAGGAGTCCGTCAAAGACTCAGTTCCTGATCAGCAGCTCAGTCAACAAGATCTCACTGTCCGATATTCCAATTATTCAAAGTCTGTGGTGAAAACATTGGCTGCTATGGATCTTGACAAAATCAACATGGACCTGGTGGAGAGTCTGTTGGAGTGGATTGTTGATGGAGACCACAGCTACCCTCCAGGGGCTGTTTTGGTCTTTCTACCAGGCCTGGCTGAAATAAAGCAATTATATGAGCAGCTGCAGTCTAACAGGATGTTCAATAATAGAAGAACAAACAGGTGTGTAGTCTATCCTCTCCACTCGTCCCTGTCCAATGAGGAGCAGCAGGCTGTGTTTACCCGCCCACAGAATGGTGTTACCAAAATCATCATTTCCACAAACATTGCTGAAACTTCTGTCACCATTGATGATGTGGTGTATGTCATAGACTCTGGACGGATGAAAGAGAAAAGGTATGATGCCAGTCGCAGTATGGAGAGTCTAGAAGATGTGTGGGTGTCTCGTGCCAATGCTCTTCAGAGAAAAGGCCGTGCTGGTCGTGTGGCATCAGGGGTTTGCTTTCATCTGTTTACAAGCCATCGCTTTGAACACCATCTGAGCCAACAGCAGCTGCCGGAGATCCAGAGAGTTCCTCTGGAGCAGCTCTGTCTACGGGTTAAGGTGCTGGAGGTGTTTGCTGAGCGTCCTCTGGACTCTGTTTTCTCTCAGCTGATTGAGCCGCCCACAGAAGGCAGTCTGGAAGCAGCTAAACAGCGCCTGTGTGCCCTTGGTGCCCTGACAGATGAGGAGTCTCTAACTCCACTGGGCTGGCATTTGGCCTGTCTGCCAGTGGACGTGCGAATTGGTAAACTCATGCTGCTGGGAGCCATCTTCCGCTGCCTCGACCCTGCCCTCACCATTGCTGCCAGCCTGGCCTTCAAGAGTCCATTCGTGTCTCCATGGGATAAACGAGAAGAAGCTAATGAGAAGAAGTTGGCTTTCTCTCTTGCGAACAGTGACCATCTAGCTTTGATGCAGGCGTACAAGGGTTGGTGTAACGCAGCTCAGAGCGGCTTTAAGGCTGGATATCAGTATTGCAGAGAAAACTTCCTTTCAATCCGAGGATTACAGGAAATAGCATGTCTTAAAAGGCAGTTTGCTGAGCTCCTGTCTGACATTGGCTTTGTGAAGGATGGACTAAAGGCCAGGGTCATTGAAAAAATGAGCTCAAAGGGAAGTGATGGGGTGCTGGAGGCTACAGGCTATGAGGCCAACCTGAACTCCGACAACACAAAGCTGATGTCAGCCATGCTGTGTGCAGCCCTCTACCCTAATGTAGTCCAGGTGAGATCTCCCCAGATGAAGTATAAGCTCACTAGCAAAGGAGCTATGAAGATGCAGCCCAAAGCAGAGGAGCAGCGCTTCATGACCAAGAGCGATGGAGCTGTCCACATTCATCCCTCATCTGTCAACTTCTCGGTGCGCCACTATGACAGTCCGTACCTTGTGTACCATGAAAAAGTGAAGACCAGTCGAGTGTTTATCCGTGACTGTAGCATGGTCTGTGTGTATCCCATGGTGCTGTTCGGTGGGGGACAAGTGAATGTGGAACTGCAGCGTGGACAGTTCATCATCTCTCTGGATGATGGCTGGATCAAATTTGCTGCTGCATCTCATGagGTAGCTGAGCTGGTGAAAGAGCTGCGATGGGAGCTGGATCAGCTTTTAGAAGAGAAGATCAAAAATCCCAGTATGGATCTGATCAGCTGTCCTAGAGGATCTCGCATCATACACACAATTGTGTCACTTATTTCAACACAGTAA

Function

symbol description
dhx57 Predicted to enable RNA binding activity. Orthologous to human DHX57 (DExH-box helicase 57).

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4078 Predicted to enable RNA binding activity. Orthologous to human DHX57 (DExH-box helicase 57).

Ensembl:

ensembl_id ENSDARG00000057660

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012454 False 4895 mRNA 0.47 23 8320455 8353515
TCONS_00012455 True 4777 mRNA 0.47 22 8320878 8353560

Neighbor

gene id symbol gene type direction distance location
XLOC_006430 atl2 coding downstream 15850 8281223 ~ 8304605 (-)
XLOC_006429 si:ch211-250c4.5 coding downstream 40922 8272043 ~ 8279533 (-)
XLOC_006428 NA coding downstream 90290 8168713 ~ 8230165 (-)
XLOC_006427 macroh2a2 coding downstream 552855 7753049 ~ 7767600 (-)
XLOC_006426 NA coding downstream 571254 7747111 ~ 7749201 (-)
XLOC_006432 epas1b coding upstream 22052 8375612 ~ 8446341 (-)
XLOC_006433 prkceb coding upstream 98794 8452354 ~ 8601184 (-)
XLOC_006434 BX004962.1 coding upstream 296151 8649711 ~ 8650051 (-)
XLOC_006435 BX004962.2 coding upstream 301559 8655119 ~ 8655447 (-)
XLOC_006436 mcfd2 coding upstream 328616 8682176 ~ 8692860 (-)
XLOC_006338 rn7sk misc downstream 7494230 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 1911181 10264741 ~ 10264905 (-)
XLOC_006421 NA non-coding downstream 997779 7269212 ~ 7322676 (-)
XLOC_006422 NA non-coding downstream 1003516 7305415 ~ 7316939 (-)
XLOC_006419 NA non-coding downstream 1165618 7154322 ~ 7154837 (-)
XLOC_006437 NA non-coding upstream 407134 8760694 ~ 8776477 (-)
XLOC_006458 NA non-coding upstream 1148207 9501767 ~ 9558425 (-)
XLOC_006467 NA non-coding upstream 1723655 10077215 ~ 10118935 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_01452947_01472013 DHX57 coding CI01000012 null 1452947 ~ 1472147 (+)