XLOC_006429 (si:ch211-250c4.5)


Basic Information

Item Value
gene id XLOC_006429
gene name si:ch211-250c4.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 8272043 ~ 8279533 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012451
CTTTATCTCATAATCCAAAGAAATGCTGAACTAAAGTATTCAGTGAGATGATGGATGCTTTTGTTCATTTGACACTAACCAGGCGGAACTGGTTTAGTTCAAAACCATTTTTATAACGTCTTTTTCCAAGTGCTTAGCGTTGCCAGCATTAGACCTGTTGCCATGGTGacagacattttaaaacattttaaacaatgaaGACTGAGTGGCACAGTAGGCTTCTGTTGCAGTCCGTTTGGAGAGACGTAATGCAAGTAAGGTAAGAACTCTGGAAGAAAGTTTCATTTTATCTTATTTAAAGTGCCTGTTGTTTCAAGTAAATCTCGGACGGCATTGTTTGAATGTTTGGCTAACTGACTTGCCTGAATACCTTACAGTACAAAGAAACTGACTTAAAATGGACTCTGATGTCGAGAAGATGAGAAAGTCTGTGCACAAGTGTAAACTTGATGGCATTCAAGACACCCAGCAGGacataaacggagcaattcctgATCATTTGGACTCCCTTCAGCCAGAAACCACCAACAGTGAAATGCAGTCAGATGATAAAGAGCTTTTTAGACAGTGGAAGAAAGGACGACAGCTCCCATCTACTAAATCACAGCGTGCTGCAGGGGACGCTAGTCTTGAAAACAGGGTTTTCAAAATCCGCCAGGGTTTACTTCAAAAATCGAATGGAAATGTCACTCAAGATTTGAATGAGCAGGCAATTGAGTCCTTGCACAGAATTCTAGCAGGAGCAGATCTGATAAGGAAGGAAGAGGCTACGATGAGCATCCTTAAGTCGAAATATGATTTTCAGATGGATCATAAATCTGTACATCTGCCCTTTGGTTACCTGGTTAGATCCAATTCAACAAGGTCTGTTGAATGCTCCTCAAATCCACccaaagttattttaaaagaaatgtcaAAGGGCAGAGAAAAAGGCAGAGCAGACAAAAGTTCATCATTCAAGGGTAAACATTTCGACTTCTTCGAAGTTGTGAAGGAACAACTCCAACAGAAGGATTTGGAAAATCAACAAGTTGTCCGTATGTTTTTGGTGAAGCAACAAGAACTTAAAGATATGAAAGAAATGTTAAAGCGTAATGACAAAGAAACCCAACTTCTAGCTGAAAAGCTGAAATGCGAAGAGCAGAAAAAGACAGAGGTCACCACCAGGTTCGACCACATTTGTGAAGACATGAAGAAGGAACTTGATGAAGCTAAGAGTAACAACAAAACCTCAATGAAGCAGCTGAAGGCACTGATGGAAAAATACGAGCGCCTCAAAACACGTGCCAAGACATTGAAGGACCAACTCAGCGAGGAGCTCGTCGAGAAAAAGAACTGTCAGAAATCCTTAAAGAAGCTTCAGCAGATGTCTCAAGAGCTGCTAACCAAGCAGAAACTTTTAGAGGAGCAAAGGGATGTAGCAGGACGAGATCTTGCCTTGTGTAATGAGACCCTGCAGATGATGGACGCCGAGCACAAGAAGAACATCAGCGTCATTCAGAGACTTGAGGAGGAGGTGTCAGCCTTGAGAAGAGAATCTGCAAACTTCAGAGATCATTTACGCAAAGCTCAGGAGAAGAACAAGGAGCTCATTCAGTCAAGCCGCTCTAGAGAGTCTGACCACGAGAAGAATGTTAAACAGCTTCAGGACAGGATTGAAAATCTGAACGTTGAATTGGAGAAGTGCCAAACTGAACGAGACGTGACGCATCAGCAGATGGAGACTATGAAATATGAATCGAAGTTGATTCACAACAAGCAGAGAGTCGAGATACTTCAACTGCACGAGCAGCAAAAAGCCTATCTGCAGCAAAATGAAGCTTTGAGAAGAGAGGCTGAGAGTTTGATGGAGATGGTCAACAAACTTAAGACAGACAAGCAAGTCCTGGCGGAGAATATGGAGGCGATTCATAAAGATAAGATGGTGTCGGAGATGGCAAGCACCAAGGAAGGAGAACGACTCAAAGAGGCCATTGGTTTGCTGGAGCGAGAGAGAGAAGTGCTGTTAGCAGAGATGGAAGACTTGCGTAAGGATTACCTTGGGATCAGTGACAGGATCACGCTGAAAATGGGCCACATTGATGCAGCTGATCCTCCGATGACCATGACTGACATCACTACAAGTCGTCAACGAAATGCACTTAAGTTCTCTCCAACTGATGATGTGATTCAAGATATAAGAAGAAAACTGGAAGAGGAGATTcagcaaaaatgattttttttttttaagaacatttcaGGCACTTGTCATTTGTTAAGACAAAGTCCCTTTCTAAGGCACTCAATGAAATACCcataatacacaaacaaacaataaaaaaagacttgTGGTTCA

Function

symbol description
si:ch211-250c4.5 Orthologous to human CCDC110 (coiled-coil domain containing 110).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-081107-33 Orthologous to human CCDC110 (coiled-coil domain containing 110).

Ensembl:

ensembl_id ENSDARG00000075943

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012451 True 2335 mRNA 0.42 2 8272043 8279533

Neighbor

gene id symbol gene type direction distance location
XLOC_006428 NA coding downstream 41878 8168713 ~ 8230165 (-)
XLOC_006427 macroh2a2 coding downstream 504443 7753049 ~ 7767600 (-)
XLOC_006426 NA coding downstream 522842 7747111 ~ 7749201 (-)
XLOC_006425 pitx3 coding downstream 696827 7555720 ~ 7575216 (-)
XLOC_006424 si:dkey-196h17.9 coding downstream 797719 7462715 ~ 7474324 (-)
XLOC_006430 atl2 coding upstream 1690 8281223 ~ 8304605 (-)
XLOC_006431 dhx57 coding upstream 40922 8320455 ~ 8353560 (-)
XLOC_006432 epas1b coding upstream 96079 8375612 ~ 8446341 (-)
XLOC_006433 prkceb coding upstream 172821 8452354 ~ 8601184 (-)
XLOC_006434 BX004962.1 coding upstream 370178 8649711 ~ 8650051 (-)
XLOC_006338 rn7sk misc downstream 7445818 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 1985208 10264741 ~ 10264905 (-)
XLOC_006421 NA non-coding downstream 949367 7269212 ~ 7322676 (-)
XLOC_006422 NA non-coding downstream 955104 7305415 ~ 7316939 (-)
XLOC_006419 NA non-coding downstream 1117206 7154322 ~ 7154837 (-)
XLOC_006435 BX004962.2 non-coding upstream 375586 8655119 ~ 8655447 (-)
XLOC_006437 NA non-coding upstream 481161 8760694 ~ 8776477 (-)
XLOC_006458 NA non-coding upstream 1222234 9501767 ~ 9558425 (-)
XLOC_006467 NA non-coding upstream 1797682 10077215 ~ 10118935 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_07414269_07416328 NA coding CI01180000 null 7413768 ~ 7416328 (-)