XLOC_006427 (macroh2a2)


Basic Information

Item Value
gene id XLOC_006427
gene name macroh2a2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 7753049 ~ 7767600 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012446
CTCTGCAGAACCAGTTTAGTCCAGCACAGATTTCGCAGACACGAATTTCTGCAGGCATTTAAAGAGACCAGTATTCGACCTTTATCAGACTTTGTATTAAACGGAGACTCAAATATAAAACTGAGCAGATATAGCAATCACAGCTCACACCGAGTATAGGCTGATTCAGAAGTGCAGCACTCAGGGGAACGCGCTCGTGCGGAGGTGCATTTTGAAGTGTTGCTCAGACTGAGTTCATTAAGCGACAGCAGGTCTATTCATGTGAACATGAATGAAGATCAACGCGCGCTCGCGTAGAGATCAGGTGAAAACAGACAGAGCTGTACAGTACTCCATCCAGTGGCACTGTGAGTCTAGAGGAGCAAAGGCAGGATGTCAGCCAGAGGAGGAAAGAAAAAGATCACCAAGCTGTCCCGTTCCGCCCGGGCGGGAGTCATTTTTCCTGTGGGGAGAATGATGCGTTACTTGCGCACAGGAACCCATAAGTATCGTATTGGCATGGGCGCCCCCGTCTACATGGCAGCTGTCATTGAGTACTTAGCAGCTGAGATTTTGGAGTTGGCTGGAAATGCAGCAAGAGACAACAAAAAAGGGAGAATTACTCCACGACACATCAAGCTGGCAGTGGCCAATGATGAAGAACTCAACCAGCTTCTCAGAGGAGTGACCATATCGAATGGTGGAGTTCTGCCTCGCATTCACCCTGAGCTGCTCTCCAAGAAGAGAGGAGGCAAGGTGAAGGTGGAGTCTCAGGTCGCCGTTCCGGAGAAGAGCGCCAAACGGAAACCCGTCAAGAAACCCTACAAAAAGAGCAAAGGAAAACCAGGCCGCAAACCCAAAAAAAGCACAGAGAACGACAAAGAAGCAGATGCCAACGCGATGGAAGACGGACCAGGAGAGGGATTTACTATCCTCTCAGCGAAAAGCTTGTTCCTTGGACAGAAGCTGTCCCTCACAGAGAGTGAAATCAGCAAAATCGGGACGATCAAAGTGGAGGGAATCATCAATCCCACAAACGCAGAGATTGATCTGAAAGAGGGAATCGGAAACGCTCTGGAGAAAACAGGAGGAAAAGATTTCCTAGAGACTGTCAAGGAGCTGAGGAAAAGCCAGGGCCCTTTGGAGGTCGCATCAgTGGCTGTGAGTCAGGCCAATGGGATGGCAGCGCGTTTCATCATCCATTGTCACGTCCCACAGTGGGGCTCCGATAAGTGCGAGGATCAGCTCGAGAAAACAGTCAAGAACTGCCTGTCTGCGGCCGAGGAGAAGAAGCTCAAATCAGTGGCTTTCCCTTCACTACCCGCTGGACGAAACGGTTTTCCAAAGCAGACGGCAGCCCAGCTCATACTGAAGGCCATTTCAAACCATTTTGTGTCAGCAACCACCTCGTCCCTGAAGAACATTTACTTTGTTCTGTTTGACAGCGAGAGCATTGGGATTTACCTGCAGGAGATGGCCAAGATGGACGCCAAGTGAAGCTCTGCCGCAGCGTCGATTTCTTTGAAAGTGTAACGGCCTCGATGCAGCTCTGTTTTTAGCTCTGCTTTCGACTCGACGCTGTGGGAAAGGGAAGTGAGTTGAACCGGAGCTTTAGCAGAGAGTGTATCCAGGCTAGTAGGAGCGTTCTAAGTGGAGTGTAGTGCAGCTTGGTAAAAGATGTTGTAggtatatgtttttgttttcttttttgacaaCAACAGATTATTTGAAGGTGTTTAAACAAGGATATTTGTGAGTGACGTACTGTACACATTCATGTTTCACTGTTCTCCTTTAAAGAAGAGACATTCATTTAGACTAGATCAACTTAATCTCCATCGTTTGACATTTTTCTCCTTAGATCGATTCTGTTTTTACATTCCATCTTTCCGAGTTGAACTTTTGACCGTTGTTTTTTTTAGCTAGATATCATATGTGGGTTTTGACAGTTTCGGTTTatcaaaaaactacaaaaaaaagtgtttcttgttctgctttgaaataaaaaaattttacacCTCA
>TCONS_00012447
gcgcgacggAACGACGGCGTTCGCATTCAGAAAAAGCCAAAGCCGAACGCTGCTCGCTTTCAGATGCGTTGATTATAAAAACACAACGCTCCACATTTGTCGCGCCGCGTCGAACCGCATCACGAGATGTAGATCGGCTGTTTTACTGTATGTTAATGCAGCgagGTACTCCATCCAGTGGCACTGTGAGTCTAGAGGAGCAAAGGCAGGATGTCAGCCAGAGGAGGAAAGAAAAAGATCACCAAGCTGTCCCGTTCCGCCCGGGCGGGAGTCATTTTTCCTGTGGGGAGAATGATGCGTTACTTGCGCACAGGAACCCATAAGTATCGTATTGGCATGGGCGCCCCCGTCTACATGGCAGCTGTCATTGAGTACTTAGCAGCTGAGATTTTGGAGTTGGCTGGAAATGCAGCAAGAGACAACAAAAAAGGGAGAATTACTCCACGACACATCAAGCTGGCAGTGGCCAATGATGAAGAACTCAACCAGCTTCTCAGAGGAGTGACCATATCGAATGGTGGAGTTCTGCCTCGCATTCACCCTGAGCTGCTCTCCAAGAAGAGAGGAGGCAAGGTGAAGGTGGAGTCTCAGGTCGCCGTTCCGGAGAAGAGCGCCAAACGGAAACCCGTCAAGAAACCCTACAAAAAGAGCAAAGGAAAACCAGGCCGCAAACCCAAAAAAAGCACAGAGAACGACAAAGAAGCAGATGCCAACGCGATGGAAGACGGACCAGGAGAGGGATTTACTATCCTCTCAGCGAAAAGCTTGTTCCTTGGACAGAAGCTGTCCCTCACAGAGAGTGAAATCAGCAAAATCGGGACGATCAAAGTGGAGGGAATCATCAATCCCACAAACGCAGAGATTGATCTGAAAGAGGGAATCG
>TCONS_00012448
AGCAGTAGCCTAAAGCCTGCCTCCATCGACAGCACGGTGGTACTGGCTGCTGTAGTTTTTCgcggtctctctctctctatttttttttaaggaacaGCAGACAGGATCGGCGCACAAGGACAGGGAAGACCAGGAACTCCTCCTTATTTGCGCCTGTCAGAAGACAGATATATGTCGTACATGACGCATTTGTAGAAAACAAACAGGTACTCCATCCAGTGGCACTGTGAGTCTAGAGGAGCAAAGGCAGGATGTCAGCCAGAGGAGGAAAGAAAAAGATCACCAAGCTGTCCCGTTCCGCCCGGGCGGGAGTCATTTTTCCTGTGGGGAGAATGATGCGTTACTTGCGCACAGGAACCCATAAGTATCGTATTGGCATGGGCGCCCCCGTCTACATGGCAGCTGTCATTGAGTACTTAGCAGCTGAGATTTTGGAGTTGGCTGGAAATGCAGCAAGAGACAACAAAAAAGGGAGAATTACTCCACGACACATCAAGCTGGCAGTGGCCAATGATGAAGAACTCAACCAGCTTCTCAGAGGAGTGACCATATCGAATGGTGGAGTTCTGCCTCGCATTCACCCTGAGCTGCTCTCCAAGAAGAGAGGAGGCAAGGTGAAGGTGGAGTCTCAGGTCGCCGTTCCGGAGAAGAGCGCCAAACGGAAACCCGTCAAGAAACCCTACAAAAAGAGCAAAGGAAAACCAGGCCGCAAACCCAAAAAAAGCACAGAGAACGACAAAGAAGCAGATGCCAACGCGATGGAAGACGGACCAGGAGAGGGATTTACTATCCTCTCAGCGAAAAGCTTGTTCCTTGGACAGAAGCTGTCCCTCACAGAGAGTGAAATCAGCAAAATCGGGACGATCAAAGTGGAGGGAATCATCAATCCCACAAACG
>TCONS_00012449
AGGCATTTAAAGAGACCAGTATTCGACCTTTATCAGACTTTGTATTAAACGGAGACTCAAATATAAAACTGAGCAGATATAGCAATCACAGCTCACACCGAGTATAGGCTGATTCAGAAGTGCAGCACTCAGGGGAACGCGCTCGTGCGGAGGTGCATTTTGAAGTGTTGCTCAGACTGAGTTCATTAAGCGACAGCAGGTCTATTCATGTGAACATGAATGAAGATCAACGCGCGCTCGCGTAGAGATCAGGTGAAAACAGACAGAGCTGTACAgaacaGCAGACAGGATCGGCGCACAAGGACAGGGAAGACCAGGAACTCCTCCTTATTTGCGCCTGTCAGAAGACAGATATATGTCGTACATGACGCATTTGTAGAAAACAAACAGGTACTCCATCCAGTGGCACTGTGAGTCTAGAGGAGCAAAGGCAGGATGTCAGCCAGAGGAGGAAAGAAAAAGATCACCAAGCTGTCCCGTTCCGCCCGGGCGGGAGTCATTTTTCCTGTGGGGAGAATGATGCGTTACTTGCGCACAGGAACCCATAAGTATCGTATTGGCATGGGCGCCCCCGTCTACATGGCAGCTGTCATTGAGTACTTAGCAGCTGAGATTTTGGAGTTGGCTGGAAATGCAGCAAGAGACAACAAAAAAGGGAGAATTACTCCACGACACATC

Function

symbol description
macroh2a2 Enables transcription cis-regulatory region binding activity. Involved in brain development. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome. Is expressed in brain; central nervous system; retina; and retinal ganglion cell layer. Orthologous to human MACROH2A2 (macroH2A.2 histone).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0006334 nucleosome assembly biological_process
GO:0006342 chromatin silencing biological_process
GO:0007420 brain development biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0031490 chromatin DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-114 Enables transcription cis-regulatory region binding activity. Involved in brain development. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome. Is expressed in brain; central nervous system; retina; and retinal ganglion cell layer. Orthologous to human MACROH2A2 (macroH2A.2 histone).

Ensembl:

ensembl_id ENSDARG00000087897

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012446 False 2001 mRNA 0.47 10 7753049 7767600
TCONS_00012447 False 883 mRNA 0.51 7 7758145 7766758
TCONS_00012448 False 897 mRNA 0.50 7 7758172 7767044
TCONS_00012449 True 678 mRNA 0.48 5 7763795 7767548

Neighbor

gene id symbol gene type direction distance location
XLOC_006426 NA coding downstream 3848 7747111 ~ 7749201 (-)
XLOC_006425 pitx3 coding downstream 177833 7555720 ~ 7575216 (-)
XLOC_006424 si:dkey-196h17.9 coding downstream 278725 7462715 ~ 7474324 (-)
XLOC_006423 si:dkey-45k15.1 coding downstream 320334 7368994 ~ 7432715 (-)
XLOC_006421 NA coding downstream 430373 7269212 ~ 7322676 (-)
XLOC_006428 NA coding upstream 401113 8168713 ~ 8230165 (-)
XLOC_006429 si:ch211-250c4.5 coding upstream 504443 8272043 ~ 8279533 (-)
XLOC_006430 atl2 coding upstream 513623 8281223 ~ 8304605 (-)
XLOC_006431 dhx57 coding upstream 552855 8320455 ~ 8353560 (-)
XLOC_006432 epas1b coding upstream 608012 8375612 ~ 8446341 (-)
XLOC_006338 rn7sk misc downstream 6926824 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 2497141 10264741 ~ 10264905 (-)
XLOC_006422 NA non-coding downstream 436110 7305415 ~ 7316939 (-)
XLOC_006419 NA non-coding downstream 598212 7154322 ~ 7154837 (-)
XLOC_006417 NA non-coding downstream 1414391 6335364 ~ 6338658 (-)
XLOC_006434 BX004962.1 non-coding upstream 882111 8649711 ~ 8650051 (-)
XLOC_006435 BX004962.2 non-coding upstream 887519 8655119 ~ 8655447 (-)
XLOC_006437 NA non-coding upstream 993094 8760694 ~ 8776477 (-)
XLOC_006458 NA non-coding upstream 1734167 9501767 ~ 9558425 (-)

Expression


Co-expression Network