CI01180000_07379273_07380075


Basic Information

Item Value
gene id CI01180000_07379273_07380075
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 7379203 ~ 7380075 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_07379273_07380075.mRNA
TAAAGGGGATATTGTTTTAGAGAATGAAGTTGTACTGACAAAAATGAAGCTCCTCAACAACTTCCCTGAGAAACTACTAAATGGTGAGGACTCCATTTCAACCATCTCCATTTCAATGTCTGAGCAGGATAACATACAGCCTCTCCAGGCTGATGAGGTAATCTCCATCCACAGCGCTGCTCCAGAGACAACTGTGACTGAATCAAAAACAGACTATCTATCTTCAATTTTTGCTGATTCTGAACTTCCAAGATTGTATAAATTTGAATCTGAGGACTCTGGGGTAGAGATGACTAGTGGAGCAACTTCCCCATCCACCCCAACTGGTTCAGAGCAAAGCTTTGTGGTCCACAGTAGAGAGTCTTCATGTGACTCTAGCAACTTGAACTCTCCTGTACCTGCTGACAGTCCTCTTGAAGACAGTTCAGTCTTTTTGGAAACTGAACAAATGTCTTGTAAATGTGCTAAACAAGATACTCTTACCATTCTGGGAGACAGAAGAGAGGATGAGAATGCTGATGATGATTTAATGGACCTCATAGCAGATTCAGAGAGGTCTGAGGACAGATCCCTGAGGAATACCATGGAGAACTGTAAAGATGAAATTGAAATTGTAGCAGCACAGGTGGAAACAACAGACAGTGCAATGGCTGAGGACATGATGTCAAGGAACCAGTGTGCCATTGAACCTTACGATGGCAAAACAGTACCTGAATTTCAGCAAAAGCCTTTGAGGAAAAGCACAACCAGCAACAGCCTGGATGAGTACATGGAAGAGTGCTGCAGGCTAAGTGAGGTATAGTCATAACAGTTTACATGTCTTTTATTGTTATTTACTTGACGTCATGGAGTTATATCTGCTTTTATATAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_07379273_07380075.mRNA True 873 mRNA 0.42 1 7379203 7380075

Neighbor

gene id symbol gene type direction distance location
CI01180000_07365562_07368471 NA coding downstream 10732 7365450 ~ 7368471 (-)
CI01180000_07244068_07250348 NA coding downstream 128294 7244019 ~ 7250909 (-)
CI01180000_07146950_07151404 H2AFY2 coding downstream 226108 7146451 ~ 7153095 (-)
CI01180000_07045235_07052218 PITX3, PITX3.S, PITX1 coding downstream 326883 7044465 ~ 7052320 (-)
CI01180000_06984285_06989850 AIFM2 coding downstream 388532 6983493 ~ 6990671 (-)
CI01180000_07414269_07416328 NA coding upstream 33693 7413768 ~ 7416328 (-)
CI01180000_07417697_07426881 ATL2 coding upstream 37449 7417524 ~ 7426881 (-)
CI01180000_07491283_07505536 KMO coding upstream 111208 7491283 ~ 7505536 (-)
CI01180000_07536722_07547119 MARCH5 coding upstream 156397 7536472 ~ 7547119 (-)
CI01180000_07598849_07621310 BTAF1 coding upstream 218158 7598233 ~ 7621310 (-)
G684049 NA non-coding downstream 29963 7348959 ~ 7349240 (-)
G684020 NA non-coding downstream 46054 7328754 ~ 7333149 (-)
G683960 NA non-coding downstream 86490 7290800 ~ 7292713 (-)
G683959 NA non-coding downstream 88485 7286938 ~ 7290718 (-)
G683979 NA non-coding downstream 184720 7194254 ~ 7194483 (-)
G684054 NA non-coding upstream 626 7380701 ~ 7385464 (-)
G684079 NA non-coding upstream 151414 7531489 ~ 7532527 (-)
G684128 NA non-coding upstream 247801 7627876 ~ 7628101 (-)
G684134 NA non-coding upstream 351874 7731949 ~ 7802982 (-)
G684147 NA non-coding upstream 422925 7803000 ~ 7833188 (-)
G683673 NA other downstream 616359 6762075 ~ 6762844 (-)
G683294 NA other downstream 1623677 5751044 ~ 5755526 (-)
G683394 NA other downstream 1759932 5618207 ~ 5619271 (-)
CI01180000_04796238_04797552 NA other downstream 2581361 4796176 ~ 4797842 (-)
CI01180000_03242704_03242928 YPEL5 other downstream 4134246 3241341 ~ 3242929 (-)
G684018 NA other upstream 23072 7403147 ~ 7413132 (-)
G684071 NA other upstream 126815 7506890 ~ 7525654 (-)
G684080 NA other upstream 199329 7579404 ~ 7582803 (-)
G684182 NA other upstream 530686 7910761 ~ 7911208 (-)
G684493 NA other upstream 1342618 8722693 ~ 8723867 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006428 NA non-coding NC_007124.7 CM002897.2 8168713 ~ 8230165 (-)