CI01180000_07598849_07621310 (BTAF1)


Basic Information

Item Value
gene id CI01180000_07598849_07621310
gene name BTAF1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 7598233 ~ 7621310 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_07598849_07621310.mRNA
TTGGAACGTCTATTTATCTTATTGGATACAGGAACGACTCCTGTTACCCGTAAAGCAGCTGCTCAGCAGCTGGGAGATGTTGTTAAGCTTCACCCACATGAGCTTAATAACCTGCTATCAAAGGTTTTAACATTCTTGAGGAGTCCGAACTGGGATACGCGAATCGCAGCGGGACAGGCTGTCGAAGCCATAGTGAAGAATATTCCGGAATGGAACCCAGCTCCGAAGCCAAAAGACGGGATGTGTCCAGAAGATATGTCTCCAGAGGATGTCTCTTCAGACAGGCTGAGTTTCTACAGGTTTGATATCTCCCGTCTGCTCAAGCACGGAGCGTCGCTGCTTGGCTCAGCAGGAGCGGAATTTGAGGTGCAAGATGATAAGTCAGGTGAGACGGATCCGAAAGAGCGTTTGGCCCGGCAGAGAAAGCAGTTGCAGAAGAAGTTGGGATTGGATATGGGTGCTGCGATCGGCATGGACACGGAGGAGCTTTTTAATGATGAGGACCTGGAGGACGCTTGTGCCTCCAGTACCAACAGATCACAGCCTGGTAAAAGCCTGGGCTGTCACTTCTCACGCAACCATTTGGCGACTGCAGAGCTCATAGATTCACAGTTTCGTCCAGGCATGAGCAATCGACAGAAGAACAAGGCCAAGAGGATGGCGAAACTGGTGGCAAAGCAGAGATCCAGAGACATGGATCCTAATGAAAAGAGGAATGACAGTTTTGAGGGAGAGCCAGAGGAGAAACGACGGAAAACCACAAATGTAGTCATTGAGCAGCCAGCAACCGACAGCAAAGTCTTAATCGATAATGTCCCTGATAACTCCAGTTTATTTGAGGAGGCTCAGGAATGGCCCCTGGAAAGCTTCTGTGATGAACTGTGCAATGACCTCTTCAACCCCTCGTGGGAGGTGGAGCGACAGCACCAGGAGTGGCTGGAGGATTTGGTCATCCGGCTTTTGTGTGTCTTTGCTTTGGACAGATTTGGAGATTTTGTGTCAGATGAGGTGGTTGCACCTGTCAGAGAGACGTGTGCCCAAACTCTGGGAGTGGCTTTGAAGCACATGGCGAACAGTGGCGTTGCCATGACTGTAGACATTCTGCTTAAGCTGCTAACTGAAGACCAGTGGGAGGTTCGACACGGAGGCCTGCTGGGCATCAAATATGTTCTTGCTGTCAGACAGGATTTGATCACAGAGCTCCTGCCCCGGGTTCTTCCTGCCATTACAGAAGGCCTGCGGGATCTGGATGATGATGTTCGTGCTGTGGCAGCAGCAGCTTTGATCCCTGTGGTGGATGGATTGGTTCAGTCACAGCCTGTCAAGGTTCCCTTCATCGTGGACACACTGTGGAATGCTCTGCTGGAGCTGGACGATCTCACAGCTTCAACTAACAGCATCATGACCCTCCTGTCCTCCTTGCTCACTTACCCACAGGGTTGTGCAGTGTGGCTGAATCCCATCATGCAGGACATGTTAAGACACATTTTTCAGTCCTGCATCCTGGAGAGCAACCAAGAGATCCTAGAGCTGATACAGAAGGTGTGGGGGGAGTTGTTGCAACAGGCCCCGCAGCAGTATGTGGTGGCGGCCAGCTGTCCTTGGATGGGTGCCTGGCTCTGTTTGATGATGCAAGCACCACACATCCCAATAGACCCCAACATGCTGCTGGAAGTGAAAGCCCGCTTAAAGGAGAAGGCTTCTGGGAAGACCCGACAGGGATCTGTTCCAGTCAAGGAAACGGTCCAGGAATACATCGGTGGAGCGGAGACAATTACAGAAGATCCTGCCACACGAGACTATGTGGTGACACGTGCACGTCTAATGGCTGCAAAGCTGTTGGGGGTGCTGTGCAATTGTATATGTGACCCACGGTTGAACAGCTCTTCTCAGGAACTCCGGCCCGCTGAGTCTCTAGCTCAGCTTTTACTGTTCCATCTCAATTCCAAATCGGCCCTGCAGCGAATTGCGGTTTCTATGGTGATCTGTGAGTGGGCAGGCCTTCAGAAGGAGTGTGAGCTGTTATCCAGTGTGGTTCAGCCCCGATTGCTGCTGATCCTCTCAGAACAACTCTACTACGATGAGATTGCCATTCCTTTTACCCGCATGCAGAACGAATGCAAACAGCTCATAGCACTGCTGGCTGACGCCCAAATTGATGTGAGAGAACGAATCAACTCCACTGTGTTCACCATCGATCAGGCCAATGAGCTGGTGACCACCATCTTTTCAGAATGCACCTCCTCTCTGAACCTCAAGTCACGTCAGTTCCAGCCTTTGGACAGTAAGAGGCTGCAGGCTCATTCCACTGTGTGCGAGACCAGTGCGGAATGGCAGCAGCTGCAGCTGAGAGTTCATACCTTCACCGCCTGCGCTGTGGTGGGACTGGCCATGCTGCCGGATAAACTCAATCCTGTGGTCAGGCCACTGATGGAGGCGGCCCGCCGCGAAGAGAACATACTTGTTCAGGGTTACGCTGCCTCCAACATCGCTCGCCTGCTGCAGCTGTGTGCTGCCAGATCTCCCTGTCCTAACGCTAAGATCGTGAAGAATCTCTGCAGCTCAGTGTGTGTAGATCCGTTGCTCACCCCTAACGCTGCCTGTCCTGTCCCGCCAGCCAGCACTCCGGCAATACAAGAGAGCAGTAAAGGGTCTGTGGCAGAGAAGGATGCGATGCATCATATGGTGAACAAGACAAAGGGCATCATCACTCTTTACCGGCATCAGAAAGCAGCTTTTGCCATCACCAGTAAGAGGGGACCCACCCCCAAAGCTCCCAAAACCAACACCAACAATGACCTGCCCCTCGGAGGCAGTATTACTCCAGAAACAGACGAGGGCAAGAAGCCATGTCTTATCCAGAGGAGAGGGGCAGAGTTCTGCTTGATGACAGTTGCCAGGCATTTCGGTCAGGAGTTGACAAAAACATTGCCATATCTGTGGGAGTTCATGACCGGTCCGCTGAGGAATGCGCTGAATGCTCATGGATTTGGTTCCAGCCAGTTGTTGAAGCAGGGAGACTCGATTGCTCAGGAGCTTGTGAACTCTCTGCAGGTGCTGGAGGTCACAGCAGGAGCCATGTCCCAAGAGCTCATCCCTGTAGTGATGGAGCAGCTGCCTCTCCTGTGCACCTGTCTGCAGCATCCATACACAGCCGTACGTCACATGGCCGCTCGCTGTGTGGGCATGCTCAGCAAGATCGCTACTATGGAGACCATGAATGTGTTTCTGGAACATGTGCTTCCCTGGTTGGGTGCTATTGATGACAACACCAAGCAGGAGGGAGCCATCGAAGCCATGGCCTGTGTGATGGAACAGTTGGATGTGGATATTGTGCCCTACATTGTGCTTTTGGTGGTCCCTGTGTTGGGCCGTATGAGTGACCCCTGTGACAGCGTGCGATTCATGGCCACACAATGCTTTGCTACTCTAATCCGACTGCTTCCTCTTGAGGCTGGAATCCCAGACCCACCGTCTATGTCTGAAGATCTAATTCGGCAGAAGGCCAGAGAACGACACTTCCTCGAGCAGCTCCTGGATGGAAGGAAACTGGAAAATTATAAGATTCCTGTGCCCATCAAAGCAGAGCTCAGAAAATACCAACAGGATGGCGTGAACTGGCTGGCATTTTTGAACAAGTACAAGCTTCATGGGATCTTGTGTGATGATATGGGTCTGGGTAAAACCTTGCAGTCCATCTGTATTCTGGCTGGCGATCATTTCCTCAGGTTGCAGCACCAGGTTAAGAAACACAATCTCATTGTTGCCTCGTATGATGTCGTTAGAAATGACATTGACTTTTTCAGGGATATTAAATTTAATTACTGTATCCTTGATGAGGGTCACGTCATTAAAAATGGAAAGACCAAACTCTCCAAAGCAATCAAGCAGTTAACTGCCAACTACAGGATAATTCTCTCAGGAACGCCCATTCAGGACAATGTTCTGGAGTTGTGGTCTCTCTTTGACTTCCTGATGCCAGGGTTTCTTGGTACTGAACGTCAGTTTGCTGCACGCTATGGGAAGCCCATCCTTGCCAGTCGAGATGCTAAAAGTTCCTCACGCGAGCAGGAAGCAGGTGTGCTGGCAATGGAAGCACTCCATAGACAAGTTCTGCCCTTCCTCCTGAGGAGAATGAAGGATGATGTGCTTCAAGATCTGCCACCCAAGATCATACAAGATTACTACTGCAACCTCAGTCCTCTACAGGTTCAACTTTACGAGGACTTTGCCAAGTCTCGCGCAAAGGTGAACGTGGATGATGTAATCTCCACAACGTCTACGCAAGAGGATGAAGAGAAACCCAAACTAAAGGCCACTGGACATGTCTTCCAGGCTCTGCAGTATCTGAGGAAGCTGTGTAATCACCCAGCACTGGTGCTGACCCCTCAACACCCAGAGTACAAACACATCATAGAACAGCTGAGCAGCCAACACTCCAACCTCAGAGACATTCAGCACGCCCCAAAACTCTCAGCCCTCAAACAGGTGCTGTTGGACTGTGGACTGGGTTCATCTGGAGCGTCTGATGGCGGCACAGAGGCTGTGGTGGCCCAGCACCGCGTTCTGATCTTCTGCCAACTGAAGAGCATGCTGGACATCGTGGAGCAGGACCTGCTCAAGTCGCAGCTGCCCACCATCTCCTACCTCAGGCTGGACGGAGGCGTTCAGGCCGGCCTCAGGCACTCAATTGTCTCCAGGTTCAATAATGACCCGTCCATTGATGTTCTGCTGCTCACTACCCATGTGGGTGGACTGGGATTGAATCTGACCGGGGCAGATACTGTGGTGTTTGTGGAGCACGACTGGAATCCCATGAGAGACTTGCAGGCCATGGACCGAGCTCACAGAATAGGACAGGAACGTGTGGTGAATGTGTATCGTCTCATCACACGAGGCACACTGGAGGAAAAGATCATGGGTCTGCAGAAATTTAAGATGACCATCGCAAATACAGTCATCAGCCAAGAGAACGCCAGTCTGCAGAGTATGGGCACAGAGCAGCTGCTCAACCTCTTCACACTGGACAAGGATGAAGCAGAGAAGAACGAGGCATCGTCGTCCTCTGGTAAAGCCAGCATGAAGTCTGTTCTGGATGGACTGGGCGACCTGTGGGACCAGCAGCAGTATGAGAATGAATACGACCTGGACAGCTTCATACACTCACTGAAATGAGCCCAGCTCAACTTGCACAACAAAAACAGAAATAACTTGAAGCCGTCTGATTGATGGAACAAAAGAGAGACGTGCACAAGCACTGTAGCTATCGGCCTTAAACACTCCAGTCTAATGCTCGTCACAGTCTTACAGCTCTTCCTCTTCCTCAAGGTTCTTACAATTCACTCAAGATTTGAGATCTAAAACTGTCTGTTTTTAATGTCACTGGAGGAAGTCTTAAAGCTTATCTTACAAGACTGCGTGTTGTACGAATTACAATATTTGAACCTCAGGATTTCCAGAAGTCCCCATCAGTATCCATGATGACAGTATTCCAGAACTGAATGAAGAGAGATGGTGAGTTCGAGGACTGGACGCACTGAAACGCTTCCATGATCGTGTAGAATGACTGTAATGGTTCATCCAGACCACTAGGAGACGCTTGACTAACTCCTGTAGCTGCTGCTCCATCAAATGTCTAACATGCACTGACTGAGATCTTTAGGTACAGCTGGAAGAGCAGCAGGACAACGGCCTTGGAAACATTGTAGAGTTTTAAAAGGAAAAAAAAAATAGAATTGTAAATATTTCTGTTATTTGCCTTTTTTGGGTAAGCTGGTAGAATTTTAATAAAT

Function

symbol description
btaf1 Predicted to enable ATP binding activity and hydrolase activity. Predicted to be located in nucleus. Orthologous to human BTAF1 (B-TFIID TATA-box binding protein associated factor 1).

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG:

id description
K15192 BTAF1, MOT1; TATA-binding protein-associated factor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_07598849_07621310.mRNA True 5792 mRNA 0.50 34 7598233 7621310

Neighbor

gene id symbol gene type direction distance location
CI01180000_07536722_07547119 MARCH5 coding downstream 51114 7536472 ~ 7547119 (-)
CI01180000_07491283_07505536 KMO coding downstream 92697 7491283 ~ 7505536 (-)
CI01180000_07417697_07426881 ATL2 coding downstream 171352 7417524 ~ 7426881 (-)
CI01180000_07414269_07416328 NA coding downstream 181905 7413768 ~ 7416328 (-)
CI01180000_07379273_07380075 NA coding downstream 218158 7379203 ~ 7380075 (-)
CI01180000_07631328_07632833 NA coding upstream 9845 7631155 ~ 7632833 (-)
CI01180000_07634809_07642632 NA coding upstream 12675 7633985 ~ 7643019 (-)
CI01180000_07664300_07675535 LRRFIP2 coding upstream 42544 7663854 ~ 7675535 (-)
CI01180000_07691853_07694359 NA coding upstream 70446 7691756 ~ 7694365 (-)
CI01180000_07696310_07709917 CAPN1A, CAPN11 coding upstream 75000 7696310 ~ 7709917 (-)
G684079 NA non-coding downstream 65706 7531489 ~ 7532527 (-)
G684054 NA non-coding downstream 212769 7380701 ~ 7385464 (-)
G684049 NA non-coding downstream 248993 7348959 ~ 7349240 (-)
G684020 NA non-coding downstream 265084 7328754 ~ 7333149 (-)
G683960 NA non-coding downstream 305520 7290800 ~ 7292713 (-)
G684128 NA non-coding upstream 6566 7627876 ~ 7628101 (-)
G684134 NA non-coding upstream 110639 7731949 ~ 7802982 (-)
G684147 NA non-coding upstream 181690 7803000 ~ 7833188 (-)
G684150 NA non-coding upstream 213063 7834373 ~ 7834663 (-)
G684152 NA non-coding upstream 218298 7839608 ~ 7839813 (-)
G684080 NA other downstream 15430 7579404 ~ 7582803 (-)
G684071 NA other downstream 72579 7506890 ~ 7525654 (-)
G684018 NA other downstream 185101 7403147 ~ 7413132 (-)
G683673 NA other downstream 835389 6762075 ~ 6762844 (-)
G683294 NA other downstream 1842707 5751044 ~ 5755526 (-)
G684182 NA other upstream 289451 7910761 ~ 7911208 (-)
G684493 NA other upstream 1101383 8722693 ~ 8723867 (-)
G684929 NA other upstream 2277114 9895316 ~ 9901388 (-)
G686052 NA other upstream 3720306 11341616 ~ 11343496 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002858 btaf1,LOC107679172,LOC106604898 coding CM030139.1 CM030139.1 4775371 ~ 4796304 (+)