CI01180000_07536722_07547119 (MARCH5)


Basic Information

Item Value
gene id CI01180000_07536722_07547119
gene name MARCH5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 7536472 ~ 7547119 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_07536722_07547119.mRNA
AGTTGTTGGGTGTGTTTTGCCACAGATGAGGATGACCGTACGGCAGAATGGGTGCGTCCGTGCCGCTGCCGTGGTTCAACTAAGTGGGTTCATCAGTCATGTCTTCAGCGCTGGGTTGATGAAAAGCAGAGGGGCAACAGCACCGCACGTGTCGCCTGCCCACAATGCAATGCTGAGTACCTCATCGTGTTCCCTAAGCTTGGTATGGCAGCTCTTAAAAACCTGTATCAGTGTTTAATATACAGGATAGGGTTATTCTGGGATATGGTTGTCAGGGTGACTGTGGCCGGCTGTGAAATTGCACCAATCATGCTCCCCGTTCAACTTTCAAATTTTAGGAACAAGTGCGAGGCAGACAGATGCAGGCCGGTGGTGTATGTTCTGGATCTGGCAGACAGGTTGATCTCAAAGGCCTGCCCGTTTGCTGCTGCTGGTATCATGGTGGGATCCATTTACTGGACGGCCGTCACTTACGGGGCTGTGACAGTCATGCAGGTTGTGGGTCATAAGGAAGGTCTGGATGTGATGGAACGGGCTGATCCTCTCTTCTTGTTGATTGGCCTGCCCACCATCCCAGTTATGCTAATTCTGGGGAAGATGATTCGCTGGGAAGATTACGTGCTCCGCCTTTGGAGGAAATACTCCAATAAGCTTCAGATCCTCAACAGTATCTTCCCAGGTATTGGCTGCCCAGTGCCCAGGATCCCGGCGGAGGCCAGTCCGTTGGCCGATCACGTGTCGGCCACACGGATTCTGTGCGGAGCCCTTGTGTTCCCCACCATCGCCACCATTGTGGGTAAACTGATGTTCAGCAGCGTCAACTCAAATCTTCAGAGGACCATTCTGGGTGGCATTGCGTTTGTGGCTATTAAAGGGGCGTTTAAGGTCTATTTCAAGCAGCAGCAGTATCTCCGACAGGCTCATCGCAAGATCCTCAATTTCCCTGAGCTGGACGAGGCCTGAGCTCATCACCGATTCCATCCACCGTCATTCTGATTTCACGCAGCTTTAAGAGACACTACCGCGCCGCCACACTACTGGACATTTTCACAAACGCTGGATTTGGTTTTCTTTTCCCTGTGAATGTGACTATTCTGTTTGGAGTTAGAACAGAGATTTAGCTTTATTTCAGTCAACATAATCAGACCTGGGAGTTGTGTGTTACACATTTTATGGGCTTGACATTTTAAGAAAGAGACTGAGGAAAAATAAAT

Function

symbol description
march5 Predicted to enable zinc ion binding activity. Acts upstream of or within convergent extension. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system; eye; and optic vesicle. Orthologous to human MARCHF5 (membrane associated ring-CH-type finger 5).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10660 MARCH5; E3 ubiquitin-protein ligase MARCH5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_07536722_07547119.mRNA True 1214 mRNA 0.50 6 7536472 7547119

Neighbor

gene id symbol gene type direction distance location
CI01180000_07491283_07505536 KMO coding downstream 30936 7491283 ~ 7505536 (-)
CI01180000_07417697_07426881 ATL2 coding downstream 109591 7417524 ~ 7426881 (-)
CI01180000_07414269_07416328 NA coding downstream 120144 7413768 ~ 7416328 (-)
CI01180000_07379273_07380075 NA coding downstream 156397 7379203 ~ 7380075 (-)
CI01180000_07365562_07368471 NA coding downstream 168001 7365450 ~ 7368471 (-)
CI01180000_07598849_07621310 BTAF1 coding upstream 51114 7598233 ~ 7621310 (-)
CI01180000_07631328_07632833 NA coding upstream 84036 7631155 ~ 7632833 (-)
CI01180000_07634809_07642632 NA coding upstream 86866 7633985 ~ 7643019 (-)
CI01180000_07664300_07675535 LRRFIP2 coding upstream 116735 7663854 ~ 7675535 (-)
CI01180000_07691853_07694359 NA coding upstream 144637 7691756 ~ 7694365 (-)
G684079 NA non-coding downstream 3945 7531489 ~ 7532527 (-)
G684054 NA non-coding downstream 151008 7380701 ~ 7385464 (-)
G684049 NA non-coding downstream 187232 7348959 ~ 7349240 (-)
G684020 NA non-coding downstream 203323 7328754 ~ 7333149 (-)
G683960 NA non-coding downstream 243759 7290800 ~ 7292713 (-)
G684128 NA non-coding upstream 80757 7627876 ~ 7628101 (-)
G684134 NA non-coding upstream 184830 7731949 ~ 7802982 (-)
G684147 NA non-coding upstream 255881 7803000 ~ 7833188 (-)
G684150 NA non-coding upstream 287254 7834373 ~ 7834663 (-)
G684152 NA non-coding upstream 292489 7839608 ~ 7839813 (-)
G684071 NA other downstream 10818 7506890 ~ 7525654 (-)
G684018 NA other downstream 123340 7403147 ~ 7413132 (-)
G683673 NA other downstream 773628 6762075 ~ 6762844 (-)
G683294 NA other downstream 1780946 5751044 ~ 5755526 (-)
G683394 NA other downstream 1917201 5618207 ~ 5619271 (-)
G684080 NA other upstream 32285 7579404 ~ 7582803 (-)
G684182 NA other upstream 363642 7910761 ~ 7911208 (-)
G684493 NA other upstream 1175574 8722693 ~ 8723867 (-)
G684929 NA other upstream 2351305 9895316 ~ 9901388 (-)
G686052 NA other upstream 3794497 11341616 ~ 11343496 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006879 march5 coding NC_007124.7 CM002897.2 42361599 ~ 42400647 (-)