G684020


Basic Information

Item Value
gene id G684020
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 7328754 ~ 7333149 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU805294
GGCGAACTATTCCTTTAATTCTGTTTATTTCTTTAAAACCACCATTTGTTTGCCAAACAGAACAGTTCAGTCAGTGCATTTGCATTATTCCATTTCCTTTATTTCACTGCATGTATTATACAGTTCTGATGTCTTCTTGCAAAATAAACAAAAAGCTAGATAGCTACTCTTAAAAAATAAAATAAAATAAAAGACTGTGCCATTATGGAAAAAAAAGACATTAACAAAACTTTAAATAATAATATTGGTGTCTCCAAAAGCATATATTGAATCAGCAATAATAAACATTTACATATTCATTCAATGCTCGGTTCTGAACAATTTAAAGAAGGGAAATGGAAGGAAAAGAAAAATATTACCCTAAAGTCAAACAGACTGTAACATGTTAGTCAGACTGACACTTTAAATGTAAATGTATACAAGTAGGTGCATAATATCCATGCAAGTGGTTTCAATTCATCTTGCAGTTGCACTTCCTGTAAAAGCAGAGAAAAAAAATGCCCTCTTATCCATTTTCAATTACATACAACAACAACAACAATATCAAAGATATCACACAAACTGTCTGATAATTTGTTCTCGGTATGAAACACACTTGTAAATGATCTAAAGAAAGAAATCTGTGAGCAGCAGGTGAACAAAGTCTGAACGTCTCACAAAAGACAGCAGTGCTCACATCGGCAGTGTGTGATGTAGAGATCAGAATGATCCAAGAATGAACTGGCATCAAAAACTACAGCTGACAAGTTTGGTTAATGTTCCTAGCTGGGCTTGACAGCTGTTTTGAAAGTGTACTCCTCATTAAAGGTCAGTTAAGCCTAGAATATGGGAAATAACTGATTATAAAGCAATGGTTTAAAAAGAAAAATCTTATTTTACATAAATATCTTACAAACAAATGCAGGATCAAAGGTTAATCTGGACAGGTGTCCCTTTTAAAAATGCTGTGTCACAAATTTGAATTTAGTCAAGGTAGTTATACTGAATTGACACATTATTTGAAGAGTACACTGTACAAAGTATGACAATACGAGATCAAAACATTTGTCAACAGGGAAATGTGTAGAAAATACATGATTTACAGTACAAATATTATATTCTTGTTCAAGACATGGAAAACAATTCACACACACTTCAATGTGCAAAATTATACTGAGAAAAAGAAATGATGCCTTGTGTACAATAAAATGAAAACCACTTCATAACATGGCATGCCCTAAAGTTTAAAAAGCACCTAATGCTAATATAATACAGAGTGCATACGATCCGATTCATTCTTCTTTTCAACATTGTAAATTGAGCATTGTCTTATGTCAGTGGGTACAGAATGATTAGTAGGCTATTTGCAGCAAATATATGATATATACATATTATAACCGGAAAAAAAAAAAAAAAAAAAAAAAAAACCCACATAGAAATACATGTTTTTAAACATACTGCTGTGAACACACTTAAAAATAAAGGTTACACTTAAGGGCTTTACAGGCTGATGCCTTAAACCAGCATGATTTACAGCCCGATAGGCTAATGGGATAGTTCACCCAAAAATGAAAATGAATTTACTCATCATTTACTCACCCTCAAATTGTTTCAAACCTTTATGAATTTCTTTTTTTTCTGCTGAACACAAAAGAAGAACTGTTTGGTTACCCATATTCTTCAAAGTATATATAATTTTCATTTTTGGGTGAACTATCCCTTTAAAAAAAAACGTTTTCTTAACATTTGCGCGTCGCGAGCGCAGCATGTCTGACAGAACAGGAAAGTTTTTCTGAGGTGAGAGACTTTTTATTTCATAACAAGCTACGAAAATAATGTTAGAATAATGACACTGACATATAGCCTGACATCATCTCATCTGACAGCAGATACTAAATCAGGACAACGCGTTTTTCTCAGGCACGTTACTTTAACTGCGTCTGACAGAACAGTCAATAGCGTTCACGCACGTCTTTCAAAATAAAAGTCTCGCATCAGAAAAGCATTTAGAATTAAGATTTTTGTTGTCGTTGTTTACACACTCTGCGATCCACCAGTTGAGAAACACTGACATAGTCGACTCAATAACCTTATAAAGTGAAAATGTGCTCCAATAAACCCATTGAAGAACCTTTATTTTTGAGTGTATCATTATGAAATGCTCATTTTTACACATATACACCTATATCACACAATGTCTTCAAAAACAAATACAAGTATATTCTCTGTAATTTATAACCCAATAACCAATATTACAAATAAACAAATTAATTTTCATTTCTCACTTACTTGACTTATCCCCTAATAGTGTTCAGATGACCATGAAAACAATGGCCTAGTAGTGTATAGGCCTACTGATAAGAAAATAGGTGTTTTTTAGGCTTGAACGAGTTGAATGGGAACTCATTTCATTTAAAAAATAATAATTACCTTGCTATCTGTATAACACCTTAAACAATTAAAACAAAGAATAGAAGATTTAATGAAACTATACAGTGGGTTTATATACAACCAATCTTTGCTTGAAACAGGTGTCAAAATAAAACGTAAGGAATGCTTGCATTAGGTTAAAAAAAAAAAAAAACAGCTGCTGGTACATATGATACCACATCTAATTTTTCTTTTTTTCGATCTAGGTCATAATTATTGTAAGGACATTAGAATATTTCCCCTCACAAACCCCATTATGGTTGCTGTGATATTGTCATCCAGTACTCCATATTCTGTGAATTTGATAATAATAACTTGCATACTGGACAACCAAAAATAGTTTTCACATAAAAAAATAAAAATAAAAAAAAGTTTACTAATCAGTCGCAGCCATAAAAAACTTCAAATAAACAAATAGTTTATCTGAAGGTCACACGTGATGAACCAACAATAAATTAAACGGCCAATCAATGTGTCACTGCTGGTTAAAATTTGTTGCTTTAGCTGCCTCATACATTCTTAAAATTACAGCCGTTCTGTACAAGTAGATTTACCCAAACAAACTGCGCTCGGTTATTTTCATAGTTTGCAAAATATACAGATCAAGTCAGCACTGACATTTATGTTTACAGCAGTGAAATGCTACATGCATGTTGCAACACCATCAAATGCCCTTGTTGCAACTAGCTATTAATTTTTTTTAAATACTGTTTTTGCAAAGTAACTTTTAGGAGGTTTGAAAGTTGGTACATAGCATTTCAAAGTATTTACAGTGATAGTCCTTCATGTTCACTTTGTTTTTAGCTGTATAAGTGATTTTAAAGGTTGATCACTATGCTATGTACAAGCACAACTGTTATGTACCTACATGTTAAATAAAACGCATAGTGTAAATGTGTACTATGATTGAAATGTGAGGTTACATTCTACCTACAACTCTCAACAGAAGGCAGTGATAGATTGAATAAGGAATCATCAAAGATTTTTCTTTCTTTGGTTTGTCTGGAAACACAAGAACACCACATTTGCATGTTCAATGAGCTGCGCTGAATCCTCTGCTCACAAACATTAATAATTGTATTTAACATTGTCATTAACAAGGAACAAAATGTGCTAAATTGTTTCTTTCACATAGTGAATAATATAAAAGAGAAAGAAAAGAGTGTAAAACTTGGAGAAATGACAAGCTACTTCTGAATTATCGTCTTTTCCGTAGTTCAGTCAGTTTCAGTCTGTTCATATCTGCTGCGCCGCCCTCTGGGGCCTTCCAGTACTACAGGACAGTTATACAGGAAACAAAATCCTTCAAACAGCCACCAAAGAGCAGCCCAAACTCAAAGATCTCCCAAAACCTCTTCAAGTTTTTGTGTTGCTTACGAAGGAAATCAAACCAGAACCATGTGAATCTCACCGCTGGATTACTTCTTGGCTAGCTGGAACGGATTCTGACCCTTTTAATAAAAAAAACATATGTATTTATAATGGACCAACACTTTACTCCTGTAAAAATGACATGGAGATGGAGAAAGCCTCAGACAACATGCATGTATAGAATAACCAGTGTTGGGGGTAATGCATTACAAGAAACGCCAGTTAAGTAATCCGATTACTTTTTTTCAAGTAACTAGAAAAGTAACTTGTTACTTTTAAATTTACAACAAAATATCTGAGTTACTTTTTCAAATAAGTAACGCAAGTTACTTTGTTTTCCCATTTATTAACTGACAGCTCTCCTGTCCCCATGTTGAGAGAAATCAGGAGTAAGTGCAGAGGCGTTGTGTGCACTGCGTAAACATGATGGTTATAGAGTGGTGGAACTATGATGTCCGGTGTTGCCAAGTCCGCGGTTTTCCTGCGGAATTGGGCTTAACACTGTTGCCGCGGGTTGTTTTTCATGTCCGCGGGTTGAAGCGACTCCAAATAACATGATATTCAGTCCCTGGAATGTGAATTTTACCAGGGGAACCCTGCCAAAAATGCGGATTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU805294 True 4396 lncRNA 0.34 1 7328754 7333149

Neighbor

gene id symbol gene type direction distance location
CI01180000_07244068_07250348 NA coding downstream 77845 7244019 ~ 7250909 (-)
CI01180000_07146950_07151404 H2AFY2 coding downstream 175659 7146451 ~ 7153095 (-)
CI01180000_07045235_07052218 PITX3, PITX3.S, PITX1 coding downstream 276434 7044465 ~ 7052320 (-)
CI01180000_06984285_06989850 AIFM2 coding downstream 338083 6983493 ~ 6990671 (-)
CI01180000_06956161_06961385 NA coding downstream 367369 6956161 ~ 6961385 (-)
CI01180000_07365562_07368471 NA coding upstream 32301 7365450 ~ 7368471 (-)
CI01180000_07379273_07380075 NA coding upstream 46054 7379203 ~ 7380075 (-)
CI01180000_07414269_07416328 NA coding upstream 80619 7413768 ~ 7416328 (-)
CI01180000_07417697_07426881 ATL2 coding upstream 84375 7417524 ~ 7426881 (-)
CI01180000_07491283_07505536 KMO coding upstream 158134 7491283 ~ 7505536 (-)
G683960 NA non-coding downstream 36041 7290800 ~ 7292713 (-)
G683959 NA non-coding downstream 38036 7286938 ~ 7290718 (-)
G683979 NA non-coding downstream 134271 7194254 ~ 7194483 (-)
G683963 NA non-coding downstream 156505 7172034 ~ 7172249 (-)
G683893 NA non-coding downstream 331961 6994830 ~ 6996793 (-)
G684049 NA non-coding upstream 15810 7348959 ~ 7349240 (-)
G684054 NA non-coding upstream 47552 7380701 ~ 7385464 (-)
G684079 NA non-coding upstream 198340 7531489 ~ 7532527 (-)
G684128 NA non-coding upstream 294727 7627876 ~ 7628101 (-)
G684134 NA non-coding upstream 398800 7731949 ~ 7802982 (-)
G683673 NA other downstream 565910 6762075 ~ 6762844 (-)
G683294 NA other downstream 1573228 5751044 ~ 5755526 (-)
G683394 NA other downstream 1709483 5618207 ~ 5619271 (-)
CI01180000_04796238_04797552 NA other downstream 2530912 4796176 ~ 4797842 (-)
CI01180000_03242704_03242928 YPEL5 other downstream 4083797 3241341 ~ 3242929 (-)
G684018 NA other upstream 69998 7403147 ~ 7413132 (-)
G684071 NA other upstream 173741 7506890 ~ 7525654 (-)
G684080 NA other upstream 246255 7579404 ~ 7582803 (-)
G684182 NA other upstream 577612 7910761 ~ 7911208 (-)
G684493 NA other upstream 1389544 8722693 ~ 8723867 (-)

Expression


Co-expression Network