RNA id: TU805294


Basic Information

Item Value
RNA id TU805294
length 4396
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G684020
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 7328754 ~ 7333149 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCGAACTATTCCTTTAATTCTGTTTATTTCTTTAAAACCACCATTTGTTTGCCAAACAGAACAGTTCAGTCAGTGCATTTGCATTATTCCATTTCCTTTATTTCACTGCATGTATTATACAGTTCTGATGTCTTCTTGCAAAATAAACAAAAAGCTAGATAGCTACTCTTAAAAAATAAAATAAAATAAAAGACTGTGCCATTATGGAAAAAAAAGACATTAACAAAACTTTAAATAATAATATTGGTGTCTCCAAAAGCATATATTGAATCAGCAATAATAAACATTTACATATTCATTCAATGCTCGGTTCTGAACAATTTAAAGAAGGGAAATGGAAGGAAAAGAAAAATATTACCCTAAAGTCAAACAGACTGTAACATGTTAGTCAGACTGACACTTTAAATGTAAATGTATACAAGTAGGTGCATAATATCCATGCAAGTGGTTTCAATTCATCTTGCAGTTGCACTTCCTGTAAAAGCAGAGAAAAAAAATGCCCTCTTATCCATTTTCAATTACATACAACAACAACAACAATATCAAAGATATCACACAAACTGTCTGATAATTTGTTCTCGGTATGAAACACACTTGTAAATGATCTAAAGAAAGAAATCTGTGAGCAGCAGGTGAACAAAGTCTGAACGTCTCACAAAAGACAGCAGTGCTCACATCGGCAGTGTGTGATGTAGAGATCAGAATGATCCAAGAATGAACTGGCATCAAAAACTACAGCTGACAAGTTTGGTTAATGTTCCTAGCTGGGCTTGACAGCTGTTTTGAAAGTGTACTCCTCATTAAAGGTCAGTTAAGCCTAGAATATGGGAAATAACTGATTATAAAGCAATGGTTTAAAAAGAAAAATCTTATTTTACATAAATATCTTACAAACAAATGCAGGATCAAAGGTTAATCTGGACAGGTGTCCCTTTTAAAAATGCTGTGTCACAAATTTGAATTTAGTCAAGGTAGTTATACTGAATTGACACATTATTTGAAGAGTACACTGTACAAAGTATGACAATACGAGATCAAAACATTTGTCAACAGGGAAATGTGTAGAAAATACATGATTTACAGTACAAATATTATATTCTTGTTCAAGACATGGAAAACAATTCACACACACTTCAATGTGCAAAATTATACTGAGAAAAAGAAATGATGCCTTGTGTACAATAAAATGAAAACCACTTCATAACATGGCATGCCCTAAAGTTTAAAAAGCACCTAATGCTAATATAATACAGAGTGCATACGATCCGATTCATTCTTCTTTTCAACATTGTAAATTGAGCATTGTCTTATGTCAGTGGGTACAGAATGATTAGTAGGCTATTTGCAGCAAATATATGATATATACATATTATAACCGGAAAAAAAAAAAAAAAAAAAAAAAAAACCCACATAGAAATACATGTTTTTAAACATACTGCTGTGAACACACTTAAAAATAAAGGTTACACTTAAGGGCTTTACAGGCTGATGCCTTAAACCAGCATGATTTACAGCCCGATAGGCTAATGGGATAGTTCACCCAAAAATGAAAATGAATTTACTCATCATTTACTCACCCTCAAATTGTTTCAAACCTTTATGAATTTCTTTTTTTTCTGCTGAACACAAAAGAAGAACTGTTTGGTTACCCATATTCTTCAAAGTATATATAATTTTCATTTTTGGGTGAACTATCCCTTTAAAAAAAAACGTTTTCTTAACATTTGCGCGTCGCGAGCGCAGCATGTCTGACAGAACAGGAAAGTTTTTCTGAGGTGAGAGACTTTTTATTTCATAACAAGCTACGAAAATAATGTTAGAATAATGACACTGACATATAGCCTGACATCATCTCATCTGACAGCAGATACTAAATCAGGACAACGCGTTTTTCTCAGGCACGTTACTTTAACTGCGTCTGACAGAACAGTCAATAGCGTTCACGCACGTCTTTCAAAATAAAAGTCTCGCATCAGAAAAGCATTTAGAATTAAGATTTTTGTTGTCGTTGTTTACACACTCTGCGATCCACCAGTTGAGAAACACTGACATAGTCGACTCAATAACCTTATAAAGTGAAAATGTGCTCCAATAAACCCATTGAAGAACCTTTATTTTTGAGTGTATCATTATGAAATGCTCATTTTTACACATATACACCTATATCACACAATGTCTTCAAAAACAAATACAAGTATATTCTCTGTAATTTATAACCCAATAACCAATATTACAAATAAACAAATTAATTTTCATTTCTCACTTACTTGACTTATCCCCTAATAGTGTTCAGATGACCATGAAAACAATGGCCTAGTAGTGTATAGGCCTACTGATAAGAAAATAGGTGTTTTTTAGGCTTGAACGAGTTGAATGGGAACTCATTTCATTTAAAAAATAATAATTACCTTGCTATCTGTATAACACCTTAAACAATTAAAACAAAGAATAGAAGATTTAATGAAACTATACAGTGGGTTTATATACAACCAATCTTTGCTTGAAACAGGTGTCAAAATAAAACGTAAGGAATGCTTGCATTAGGTTAAAAAAAAAAAAAAACAGCTGCTGGTACATATGATACCACATCTAATTTTTCTTTTTTTCGATCTAGGTCATAATTATTGTAAGGACATTAGAATATTTCCCCTCACAAACCCCATTATGGTTGCTGTGATATTGTCATCCAGTACTCCATATTCTGTGAATTTGATAATAATAACTTGCATACTGGACAACCAAAAATAGTTTTCACATAAAAAAATAAAAATAAAAAAAAGTTTACTAATCAGTCGCAGCCATAAAAAACTTCAAATAAACAAATAGTTTATCTGAAGGTCACACGTGATGAACCAACAATAAATTAAACGGCCAATCAATGTGTCACTGCTGGTTAAAATTTGTTGCTTTAGCTGCCTCATACATTCTTAAAATTACAGCCGTTCTGTACAAGTAGATTTACCCAAACAAACTGCGCTCGGTTATTTTCATAGTTTGCAAAATATACAGATCAAGTCAGCACTGACATTTATGTTTACAGCAGTGAAATGCTACATGCATGTTGCAACACCATCAAATGCCCTTGTTGCAACTAGCTATTAATTTTTTTTAAATACTGTTTTTGCAAAGTAACTTTTAGGAGGTTTGAAAGTTGGTACATAGCATTTCAAAGTATTTACAGTGATAGTCCTTCATGTTCACTTTGTTTTTAGCTGTATAAGTGATTTTAAAGGTTGATCACTATGCTATGTACAAGCACAACTGTTATGTACCTACATGTTAAATAAAACGCATAGTGTAAATGTGTACTATGATTGAAATGTGAGGTTACATTCTACCTACAACTCTCAACAGAAGGCAGTGATAGATTGAATAAGGAATCATCAAAGATTTTTCTTTCTTTGGTTTGTCTGGAAACACAAGAACACCACATTTGCATGTTCAATGAGCTGCGCTGAATCCTCTGCTCACAAACATTAATAATTGTATTTAACATTGTCATTAACAAGGAACAAAATGTGCTAAATTGTTTCTTTCACATAGTGAATAATATAAAAGAGAAAGAAAAGAGTGTAAAACTTGGAGAAATGACAAGCTACTTCTGAATTATCGTCTTTTCCGTAGTTCAGTCAGTTTCAGTCTGTTCATATCTGCTGCGCCGCCCTCTGGGGCCTTCCAGTACTACAGGACAGTTATACAGGAAACAAAATCCTTCAAACAGCCACCAAAGAGCAGCCCAAACTCAAAGATCTCCCAAAACCTCTTCAAGTTTTTGTGTTGCTTACGAAGGAAATCAAACCAGAACCATGTGAATCTCACCGCTGGATTACTTCTTGGCTAGCTGGAACGGATTCTGACCCTTTTAATAAAAAAAACATATGTATTTATAATGGACCAACACTTTACTCCTGTAAAAATGACATGGAGATGGAGAAAGCCTCAGACAACATGCATGTATAGAATAACCAGTGTTGGGGGTAATGCATTACAAGAAACGCCAGTTAAGTAATCCGATTACTTTTTTTCAAGTAACTAGAAAAGTAACTTGTTACTTTTAAATTTACAACAAAATATCTGAGTTACTTTTTCAAATAAGTAACGCAAGTTACTTTGTTTTCCCATTTATTAACTGACAGCTCTCCTGTCCCCATGTTGAGAGAAATCAGGAGTAAGTGCAGAGGCGTTGTGTGCACTGCGTAAACATGATGGTTATAGAGTGGTGGAACTATGATGTCCGGTGTTGCCAAGTCCGCGGTTTTCCTGCGGAATTGGGCTTAACACTGTTGCCGCGGGTTGTTTTTCATGTCCGCGGGTTGAAGCGACTCCAAATAACATGATATTCAGTCCCTGGAATGTGAATTTTACCAGGGGAACCCTGCCAAAAATGCGGATTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU805232 lncRNA downstream 36041 7290800 ~ 7292713 (-) True G683960
TU805231 lncRNA downstream 38036 7286938 ~ 7290718 (-) True G683959
TU805251 lncRNA downstream 134271 7194254 ~ 7194483 (-) True G683979
TU805235 lncRNA downstream 156505 7172034 ~ 7172249 (-) True G683963
TU805153 lncRNA downstream 331961 6994830 ~ 6996793 (-) True G683893
TU805323 lncRNA upstream 15810 7348959 ~ 7349240 (-) True G684049
TU805328 lncRNA upstream 47552 7380701 ~ 7385464 (-) True G684054
TU805356 lncRNA upstream 198340 7531489 ~ 7532527 (-) True G684079
TU805408 lncRNA upstream 294727 7627876 ~ 7628101 (-) True G684128
TU805414 lncRNA upstream 398800 7731949 ~ 7802982 (-) True G684134
CI01180000_07244068_07250348.mRNA mRNA downstream 77845 7244019 ~ 7250909 (-) True CI01180000_07244068_07250348
CI01180000_07146950_07151404.mRNA mRNA downstream 175659 7146451 ~ 7153095 (-) True CI01180000_07146950_07151404
CI01180000_07045235_07052218.mRNA mRNA downstream 276434 7044465 ~ 7052320 (-) True CI01180000_07045235_07052218
CI01180000_06984285_06989850.mRNA mRNA downstream 338083 6983493 ~ 6990671 (-) True CI01180000_06984285_06989850
CI01180000_06956161_06961385.mRNA mRNA downstream 367369 6956161 ~ 6961385 (-) True CI01180000_06956161_06961385
CI01180000_07365562_07368471.mRNA mRNA upstream 32301 7365450 ~ 7368471 (-) True CI01180000_07365562_07368471
CI01180000_07379273_07380075.mRNA mRNA upstream 46054 7379203 ~ 7380075 (-) True CI01180000_07379273_07380075
CI01180000_07414269_07416328.mRNA mRNA upstream 80619 7413768 ~ 7416328 (-) True CI01180000_07414269_07416328
CI01180000_07417697_07426881.mRNA mRNA upstream 84375 7417524 ~ 7426881 (-) True CI01180000_07417697_07426881
CI01180000_07491283_07505536.mRNA mRNA upstream 158134 7491283 ~ 7505536 (-) True CI01180000_07491283_07505536
TU804922 other downstream 565910 6762075 ~ 6762844 (-) True G683673
TU804519 other downstream 1573228 5751044 ~ 5755526 (-) False G683294
TU804622 other downstream 1709483 5618207 ~ 5619271 (-) True G683394
TU804315 other downstream 2530912 4796260 ~ 4797842 (-) True CI01180000_04796238_04797552
TU801483 other downstream 4083797 3244350 ~ 3244957 (-) True G680603
TU805291 other upstream 69998 7403147 ~ 7413132 (-) False G684018
TU805292 other upstream 70835 7403984 ~ 7413132 (-) True G684018
TU805347 other upstream 173741 7506890 ~ 7525654 (-) True G684071
TU805357 other upstream 246255 7579404 ~ 7582803 (-) True G684080
TU805466 other upstream 577612 7910761 ~ 7911208 (-) False G684182

Expression Profile