RNA id: TU805235


Basic Information

Item Value
RNA id TU805235
length 216
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G683963
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 7172034 ~ 7172249 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTAGCCTCCTTGTTAGAATGTCCGACTCCCATGCGGACGGGCCCAGGTTTGCGGCCCGCTTGGAGCGGGCAGGTGCGAACTGGAGGGGCTACATTGGTGCCATGACCCAGATGGGGGTGAGTGTAACAGACGTATGCTAGTAAGAGCTTTGCGTGTAAACCTCACTCCCCTGATCTCAAGAGATGCTCTAGTGACTGACGCCAGAGGTTGCAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU805153 lncRNA downstream 175241 6994830 ~ 6996793 (-) True G683893
TU805147 lncRNA downstream 188997 6982770 ~ 6983037 (-) True G683890
TU805143 lncRNA downstream 195424 6976385 ~ 6976610 (-) True G683886
TU805142 lncRNA downstream 197353 6974469 ~ 6974681 (-) True G683885
TU805093 lncRNA downstream 254217 6915701 ~ 6917817 (-) True G683838
TU805251 lncRNA upstream 22005 7194254 ~ 7194483 (-) True G683979
TU805231 lncRNA upstream 114689 7286938 ~ 7290718 (-) True G683959
TU805232 lncRNA upstream 118551 7290800 ~ 7292713 (-) True G683960
TU805294 lncRNA upstream 156505 7328754 ~ 7333149 (-) True G684020
TU805323 lncRNA upstream 176710 7348959 ~ 7349240 (-) True G684049
CI01180000_07146950_07151404.mRNA mRNA downstream 18939 7146451 ~ 7153095 (-) True CI01180000_07146950_07151404
CI01180000_07045235_07052218.mRNA mRNA downstream 119714 7044465 ~ 7052320 (-) True CI01180000_07045235_07052218
CI01180000_06984285_06989850.mRNA mRNA downstream 181363 6983493 ~ 6990671 (-) True CI01180000_06984285_06989850
CI01180000_06956161_06961385.mRNA mRNA downstream 210649 6956161 ~ 6961385 (-) True CI01180000_06956161_06961385
CI01180000_06936274_06938957.mRNA mRNA downstream 233077 6936263 ~ 6938957 (-) True CI01180000_06936274_06938957
CI01180000_07244068_07250348.mRNA mRNA upstream 71770 7244019 ~ 7250909 (-) True CI01180000_07244068_07250348
CI01180000_07365562_07368471.mRNA mRNA upstream 193201 7365450 ~ 7368471 (-) True CI01180000_07365562_07368471
CI01180000_07379273_07380075.mRNA mRNA upstream 206954 7379203 ~ 7380075 (-) True CI01180000_07379273_07380075
CI01180000_07414269_07416328.mRNA mRNA upstream 241519 7413768 ~ 7416328 (-) True CI01180000_07414269_07416328
CI01180000_07417697_07426881.mRNA mRNA upstream 245275 7417524 ~ 7426881 (-) True CI01180000_07417697_07426881
TU804922 other downstream 409190 6762075 ~ 6762844 (-) True G683673
TU804519 other downstream 1416508 5751044 ~ 5755526 (-) False G683294
TU804622 other downstream 1552763 5618207 ~ 5619271 (-) True G683394
TU804315 other downstream 2374192 4796260 ~ 4797842 (-) True CI01180000_04796238_04797552
TU801483 other downstream 3927077 3244350 ~ 3244957 (-) True G680603
TU805291 other upstream 230898 7403147 ~ 7413132 (-) False G684018
TU805292 other upstream 231735 7403984 ~ 7413132 (-) True G684018
TU805347 other upstream 334641 7506890 ~ 7525654 (-) True G684071
TU805357 other upstream 407155 7579404 ~ 7582803 (-) True G684080
TU805466 other upstream 738512 7910761 ~ 7911208 (-) False G684182

Expression Profile