RNA id: TU805231



Basic Information


Item Value
RNA id TU805231
length 1876
lncRNA type antisense_over
GC content 0.37
exon number 5
gene id G683959
representative True

Chromosome Information


Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 7286938 ~ 7290718 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAAAAAAAAAATTATACTGACCTCAAACTTCTGAATGTAGTGTACATATTCCAATATATAAACATACTATATGACTATAAATATATAAGCTATATTTTTATATATTTTTATTTTTATATATACACAATCTATAATATCATATATACAAAAACACACTGATTGTCTCAATGAATTTCAGAGTAAGTGGAAAATACATACAAATAAAGAAAGAAGGCAAGTGTTTTAAAGTGTCCTTATCTCCCTGCAGAAGGTGTTTCACCAATTTAACCAGAATGTTACATTGTTTTAAGGTACTCTATGCATAAGGAGGCCAATCAAAATATAAAAGAGACATGGAATTTATGTATTTAACATATCCAAAAAAACATTTGGATGCATCTTGATGTCATATAAAGTTACAGTTGCATAGTGTACCTTAAAATGTTATACCACAACCATAAAAGTTCCCTAAGGCGGCCAAAGAAAAAGCAAGAAAACAGCTGTGTTTTAAGATATGTCATTATAAATTCCTACAGTGTTTTCAATCAGTTATAATAACAGGCACCTCTCTGCACCTCCAACAGTGCATGTGGATAAACTAGAGCACGGTTTTCAGCTATGTCTCTCTTTGCAGCAGGACTGTAACACACATATCGCGGTATTAGGGATGAGGGACAGAACAGCCCACAAACCTTCAACATCAGAGCCTGACTGGAGCGCAAAGCTGCCAGCGTTTTCATTGGGAGCCCCTGCTTAAAATGGCCCAACATATAAATACACGGACATGGATACGGATACATAAACACACACACGCACACACATTCAAGTGATAATACCCATTTTTGTTCCGTCACTGCAGGGTGTATCCTTTCAGTCTAGCGCAGTGACCTTTGGCTTTAACCCTAACTGCAAATAACCTACAGTACAACCACCCAAAAAGACTACCATATATGTGCAGTTTTCTAAATAGTCAACTGCCTCCCACGTGGCCTAGCTGACACGCATGAAGAAAGAATGACTCTGTTTTGATGTGATATATCTGTATGATATTCTGACTACACTTACTTGTACTGTACACAATAAAATCAGTGATTAAATAGTTAAAAAACAACTATCAACTGTACGTGTCCTGCTGCTGTTTCTGTTCTTTCTTTTCCAATCAAAACACACATTCAGTAGAAACATCTACTGCCAAGACTATTTTTCTGCTTTTATATTGCGTGTTGTTTTTGAGATTACATAATTGATAAAATAGCTTCAAAAGGCCAAAATTACATTTAAATAGGCTAGGGCTGTTACCAAAACCCCTTTTAAAAGAGAGTCTTATCAAATTCAATTCAGCAGACTGTTGGTAAAATTGCTGTTTACATGAAACTGTGATTTTCCCGAGAGAGGGCTGATCAACTTTTGAGGCCCTGCCTTGGCATGTGCTCATGTGCTACCTATCTGAGACTATCCAAGCTGCCAATCCATTATTCCTTCCCTTTTTCCCTCTATGTTAATGTCTGTAAATTAACCGCAAAGCATGTTGTACATGTCTTTTTCAGGGTAAACAAGACAAATCTCTTTGACAAATAGAAGACTATCACGTAAAACTGGAATGAAAACATATGCTTGGGATTTTTCAGCACACAACACCAGACAACCTTTGAATCATATTTGGTAGCTTATTTTAAACCATAAATGAAACATTCACAGCGTTTATCTCATCACAAAATCAATTCAGTAAGTTTAATAAAACATTCACTCACCCTGTGAGTGTAGTCACCACATACACCCTTCTCTCCTTTTGGACCAGGTTCACCTGGTACTCCTTTGGGACCACGAGGACCCATATCACCTTTTGGACCATTCTGTCCGGGTTTCCCGTCCAAGCCGATGGGGCCCTGGAAAAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU805251 lncRNA downstream 92455 7194254 ~ 7194483 (-) True G683979
TU805235 lncRNA downstream 114689 7172034 ~ 7172249 (-) True G683963
TU805153 lncRNA downstream 290145 6994830 ~ 6996793 (-) True G683893
TU805147 lncRNA downstream 303901 6982770 ~ 6983037 (-) True G683890
TU805143 lncRNA downstream 310328 6976385 ~ 6976610 (-) True G683886
TU805232 lncRNA upstream 82 7290800 ~ 7292713 (-) True G683960
TU805294 lncRNA upstream 38036 7328754 ~ 7333149 (-) True G684020
TU805323 lncRNA upstream 58241 7348959 ~ 7349240 (-) True G684049
TU805328 lncRNA upstream 89983 7380701 ~ 7385464 (-) True G684054
TU805356 lncRNA upstream 240771 7531489 ~ 7532527 (-) True G684079
CI01180000_07244068_07250348.mRNA mRNA downstream 36029 7244019 ~ 7250909 (-) True CI01180000_07244068_07250348
CI01180000_07146950_07151404.mRNA mRNA downstream 133843 7146451 ~ 7153095 (-) True CI01180000_07146950_07151404
CI01180000_07045235_07052218.mRNA mRNA downstream 234618 7044465 ~ 7052320 (-) True CI01180000_07045235_07052218
CI01180000_06984285_06989850.mRNA mRNA downstream 296267 6983493 ~ 6990671 (-) True CI01180000_06984285_06989850
CI01180000_06956161_06961385.mRNA mRNA downstream 325553 6956161 ~ 6961385 (-) True CI01180000_06956161_06961385
CI01180000_07365562_07368471.mRNA mRNA upstream 74732 7365450 ~ 7368471 (-) True CI01180000_07365562_07368471
CI01180000_07379273_07380075.mRNA mRNA upstream 88485 7379203 ~ 7380075 (-) True CI01180000_07379273_07380075
CI01180000_07414269_07416328.mRNA mRNA upstream 123050 7413768 ~ 7416328 (-) True CI01180000_07414269_07416328
CI01180000_07417697_07426881.mRNA mRNA upstream 126806 7417524 ~ 7426881 (-) True CI01180000_07417697_07426881
CI01180000_07491283_07505536.mRNA mRNA upstream 200565 7491283 ~ 7505536 (-) True CI01180000_07491283_07505536
TU804922 other downstream 524094 6762075 ~ 6762844 (-) True G683673
TU804519 other downstream 1531412 5751044 ~ 5755526 (-) False G683294
TU804622 other downstream 1667667 5618207 ~ 5619271 (-) True G683394
TU804315 other downstream 2489096 4796260 ~ 4797842 (-) True CI01180000_04796238_04797552
TU801483 other downstream 4041981 3244350 ~ 3244957 (-) True G680603
TU805291 other upstream 112429 7403147 ~ 7413132 (-) False G684018
TU805292 other upstream 113266 7403984 ~ 7413132 (-) True G684018
TU805347 other upstream 216172 7506890 ~ 7525654 (-) True G684071
TU805357 other upstream 288686 7579404 ~ 7582803 (-) True G684080
TU805466 other upstream 620043 7910761 ~ 7911208 (-) False G684182

Expression Profile