RNA id: TU804922


Basic Information

Item Value
RNA id TU804922
length 660
RNA type TUCP
GC content 0.47
exon number 2
gene id G683673
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 6762075 ~ 6762844 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCCTGGAATTGTCAAGAGGACAGAACAGGGAATAAAGACAAAAAGCAGGTGAACACGAGCCAAATTTTATTTTCAGATATTCTCATCCATGTTTTGCCCTGAGACATATGTATTTGTAACAAGAACTCACCAGAGCAGAGACAAAGGACTCTTAAATAAAACATGTCTTTCAAGAACAAGTCAACAAACATTCAGTTAATCAGTTAACAAAGGTGTGGGGAGGTGGAGAGAGAAGAATGTGTGAAGTGCAGTCTACTTTTGGGCAGGCATGAGGTCCTCAATGGACTGGCCTTTCTCCAGCCGTTTCTCCATCTCTATCAGCAGTTTGACTCCATCCACCACCATCTGCATCAGCTCCACCTCAGAGAAGCCCAGGCGGTCAGCGTTGGAGATGTCAAAAACACCACCCACGGCTGCAGTGTCCACAACCTGTTCCACGTTTCTGCAGCCTCAGTCTCTTAAGGACCTCTTCAAACTGGCGGTACTTGCTGAGGTTAGGCAGTTTGACATGCACTCCTGCACGCAGGCCTGTGCCGAGGTTGGATGGGCAGGTGAGGACGTAGCCAAGGTGCTCATTCCACATGAACGCGTGACCCTTGTTTTTGAACAACTCCTCAATCTGAAAGAACAAACAGTGTTTTTTGCAGCTCTGTTCAAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU805061 lncRNA downstream 79773 6682024 ~ 6682302 (-) True G683808
TU804937 lncRNA downstream 115240 6645481 ~ 6646835 (-) True G683685
TU804947 lncRNA downstream 116748 6645108 ~ 6645327 (-) True G683695
TU804942 lncRNA downstream 170841 6583088 ~ 6591234 (-) True G683690
TU805055 lncRNA downstream 190008 6571802 ~ 6572067 (-) True G683802
TU805082 lncRNA upstream 50729 6813573 ~ 6814083 (-) True G683829
TU804945 lncRNA upstream 57077 6819921 ~ 6822353 (-) True G683693
TU805099 lncRNA upstream 61235 6824079 ~ 6849582 (-) True G683843
TU805116 lncRNA upstream 105133 6867977 ~ 6868178 (-) True G683859
TU805119 lncRNA upstream 110529 6873373 ~ 6873646 (-) True G683862
CI01180000_06738893_06754819.mRNA mRNA downstream 7256 6738450 ~ 6754819 (-) True CI01180000_06738893_06754819
CI01180000_06663465_06695698.mRNA mRNA downstream 66377 6663144 ~ 6695698 (-) True CI01180000_06663465_06695698
CI01180000_06632984_06634975.mRNA mRNA downstream 126487 6632908 ~ 6635588 (-) True CI01180000_06632984_06634975
CI01180000_06486818_06495260.mRNA mRNA downstream 266802 6486662 ~ 6495273 (-) True CI01180000_06486818_06495260
CI01180000_06464722_06478949.mRNA mRNA downstream 283126 6463831 ~ 6478949 (-) True CI01180000_06464722_06478949
CI01180000_06764688_06798535.mRNA mRNA upstream 1055 6763899 ~ 6798535 (-) True CI01180000_06764688_06798535
CI01180000_06801398_06808587.mRNA mRNA upstream 38246 6801090 ~ 6808787 (-) True CI01180000_06801398_06808587
CI01180000_06854398_06859861.mRNA mRNA upstream 91452 6854296 ~ 6859861 (-) True CI01180000_06854398_06859861
CI01180000_06893062_06910960.mRNA mRNA upstream 129852 6892696 ~ 6910960 (-) True CI01180000_06893062_06910960
CI01180000_06936274_06938957.mRNA mRNA upstream 173419 6936263 ~ 6938957 (-) True CI01180000_06936274_06938957
TU804519 other downstream 1006549 5751044 ~ 5755526 (-) False G683294
TU804622 other downstream 1142804 5618207 ~ 5619271 (-) True G683394
TU804315 other downstream 1964233 4796260 ~ 4797842 (-) True CI01180000_04796238_04797552
TU801483 other downstream 3517118 3244350 ~ 3244957 (-) True G680603
TU801484 other downstream 3742400 3019498 ~ 3019675 (-) False G680604
TU805291 other upstream 640303 7403147 ~ 7413132 (-) False G684018
TU805292 other upstream 641140 7403984 ~ 7413132 (-) True G684018
TU805347 other upstream 744046 7506890 ~ 7525654 (-) True G684071
TU805357 other upstream 816560 7579404 ~ 7582803 (-) True G684080
TU805466 other upstream 1147917 7910761 ~ 7911208 (-) False G684182

Expression Profile