RNA id: TU804315


Basic Information

Item Value
RNA id TU804315
length 643
RNA type TUCP
GC content 0.51
exon number 3
gene id CI01180000_04796238_04797552
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 4796176 ~ 4797842 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCCTCAGCAGAGTTTGGAAAGGTCAGAGAGAGTGCGATTGAATCGGCAGCTCTCTGACAAGAAAGATTTAAGAAGATGGATTTTTAAAACCCCTTTTTACCGTGTCTTGTGTAATCTGGCGTCGTTATTATGCAGCATTCTGTTTCTTTCAACCCTAAATAATATCAATTTAAGCCCCTGTCCGGGTTGCTGAGCGTTTGCTAACTTGGCTTAACCCTTTGTCGTCTTGATCGCGCCTGACTGGATCATATTTTCAAGAAGCTTCTGACGATCCGCGTCCCTTCAGAAATGGATTTAGATATTGTTCCAGGCGACATCAGCCCTGTAAATGATCCGTTCAGCACCGGGCCCGAATCAGCCCACCGACCTCCTCGGTTCTCCTTGCCGGAGGTCGGGGCGAGGGGCTCCCCCTGCATGAAGAACCTGGCCTCCCCCGGACCCATGGCAGTGCTGTCTCCCGTGACTAACCTGGCTCTAAACATGAATAATCTCGCTGTTCTCGGAGGTCAATGTGAGACACCAAAGCGGAAGAAAAACTTGCCCCTCCTGAAGATCCCTTCCTTCGCCTCTGATGCCTCCTCCGATGCAGGTCTTGGGCTAGATTCTCCCAGCCCTTTGGACTCTCTGGATGCTGAGCAGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU804346 lncRNA downstream 52460 4743483 ~ 4743800 (-) True G683140
TU804341 lncRNA downstream 56262 4739510 ~ 4739998 (-) True G683135
TU804215 lncRNA downstream 249361 4544971 ~ 4546899 (-) True G683022
TU804180 lncRNA downstream 366785 4428131 ~ 4429475 (-) True G682989
TU804176 lncRNA downstream 376228 4418008 ~ 4420032 (-) True G682986
TU804416 lncRNA upstream 43633 4841475 ~ 4841688 (-) True G683203
TU804397 lncRNA upstream 58341 4856183 ~ 4858174 (-) True G683184
TU804395 lncRNA upstream 161360 4959202 ~ 4960925 (-) True G683182
TU804396 lncRNA upstream 167198 4965040 ~ 4965500 (-) True G683183
TU804393 lncRNA upstream 169599 4967441 ~ 5046813 (-) True G683180
CI01180000_04790491_04793557.mRNA mRNA downstream 2596 4789538 ~ 4793664 (-) True CI01180000_04790491_04793557
CI01180000_04780398_04786371.mRNA mRNA downstream 9889 4779898 ~ 4786371 (-) True CI01180000_04780398_04786371
CI01180000_04567468_04575805.mRNA mRNA downstream 220455 4567235 ~ 4575805 (-) True CI01180000_04567468_04575805
CI01180000_04554549_04560819.mRNA mRNA downstream 234488 4553441 ~ 4561772 (-) True CI01180000_04554549_04560819
CI01180000_04327538_04335433.mRNA mRNA downstream 459871 4327360 ~ 4336389 (-) True CI01180000_04327538_04335433
CI01180000_04833972_04834223.mRNA mRNA upstream 35162 4833004 ~ 4836841 (-) True CI01180000_04833972_04834223
CI01180000_04863395_04878213.mRNA mRNA upstream 65206 4863048 ~ 4878213 (-) True CI01180000_04863395_04878213
CI01180000_04885766_04904637.mRNA mRNA upstream 87097 4884939 ~ 4905382 (-) True CI01180000_04885766_04904637
CI01180000_04970618_04977149.mRNA mRNA upstream 172378 4970220 ~ 4977149 (-) True CI01180000_04970618_04977149
CI01180000_04978607_04980946.mRNA mRNA upstream 180726 4978568 ~ 4980946 (-) True CI01180000_04978607_04980946
TU801483 other downstream 1551303 3244350 ~ 3244957 (-) True G680603
TU801485 other downstream 1776585 3019498 ~ 3019675 (-) False G680604
TU801487 other downstream 1776585 3019498 ~ 3019675 (-) True G680604
TU801484 other downstream 1776585 3019498 ~ 3019675 (-) False G680604
TU801486 other downstream 1776585 3019498 ~ 3019675 (-) True G680604
TU804622 other upstream 820365 5618207 ~ 5619271 (-) True G683394
TU804519 other upstream 953202 5751044 ~ 5755526 (-) False G683294
TU804922 other upstream 1964233 6762075 ~ 6762844 (-) True G683673
TU805291 other upstream 2605305 7403147 ~ 7413132 (-) False G684018
TU805292 other upstream 2606142 7403984 ~ 7413132 (-) True G684018

Expression Profile