RNA id: TU801486


Basic Information

Item Value
RNA id TU801486
length 178
RNA type TUCP
GC content 0.44
exon number 1
gene id G680604
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3019498 ~ 3019675 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAATCTCTATGGTGACTGACTGACTGCGGAGAGGCAGAAGCTAGTGCAGTTTCCAGTAGTTTAATTAGTAGTTAGTGACTGATCATCATCATGGCTAAAAGTGACGGCTGCTCGTATTTCAGGAGATCCAGTCTGTTCTGGATCGTGACCGTGACGGTTTCTTTGGGCTTTTTCACGTGGACAGTGTTTTGGCCTCAGGACGTCCCGTATGGCAGTCTGGGTCCTCTCGGAGCTCTGGCCAAACATTTGGTTGACTATCATTATCCTGTGCTGTATTACGGATGGTATCTGACGTGGATCATCCATTTGTTCGAGGCTCTTTATGCGCTGAAGGTCTGCAGTGATAAAGGCATCGACAACACTTCCACACGTTTGCTGTGGTTTGCTCAGACCTTCTTGTTTGGTATCGCGTCTCTTGGTCTTCTGCTCAAATACAAGCCCGACGGCCGACCCAAGCGCCAGTGAGAGAAACCACCGGTCATTTCCCAGCAGGATACTGATCTTTGTATTCCAGAGGATGTCAACAGGAGCACATAAAGCAGCTGTCGAGGTTTCAGTTATACGGTCACATCACTTCCATGTTTAGCATGGCCTTTTTTTACATGATCCGGGTTTAGTTCAACTATCAGCAGCATTAATGTCCTTTCCCACAGAAAATCATTTCAACTCGACAGTCAGTGTTTTAAAAAGTGCAGCGAGACTGAGTGATAAACATCAAAATACACACTGTTTAGTTACACATGTTTACATGAGACTAGTGTCTAGTGACCTTTACTGGTATAGATAGTTTAAGAGCCATGGAAATCCTGTAAACATGGTAACTTTATTAACAATAATAGTAACAATATTCAGCGAGCCCTCCATTTAAGCTGTAATATTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU801473 lncRNA downstream 113340 2902394 ~ 2902669 (-) True G680593
TU801470 lncRNA downstream 120241 2895555 ~ 2895768 (-) True G680590
TU801466 lncRNA downstream 168448 2844897 ~ 2847561 (-) True G680587
TU801443 lncRNA downstream 248569 2767334 ~ 2767440 (-) True G680564
TU801421 lncRNA downstream 332366 2682959 ~ 2683643 (-) True G680553
TU801515 lncRNA upstream 31866 3051541 ~ 3052279 (-) True G680619
TU801516 lncRNA upstream 105792 3125467 ~ 3126122 (-) True G680620
TU801547 lncRNA upstream 177253 3196928 ~ 3197254 (-) True G680649
TU801563 lncRNA upstream 244160 3263835 ~ 3264983 (-) True G680665
TU801571 lncRNA upstream 260556 3280231 ~ 3285385 (-) True G680673
CI01180000_02988807_02995955.mRNA mRNA downstream 18608 2987468 ~ 2997401 (-) False CI01180000_02988807_02995955
CI01180000_02894674_02906257.mRNA mRNA downstream 109710 2894529 ~ 2906299 (-) True CI01180000_02894674_02906257
CI01180000_02880794_02889498.mRNA mRNA downstream 126051 2880139 ~ 2889958 (-) True CI01180000_02880794_02889498
CI01180000_02758855_02763187.mRNA mRNA downstream 252822 2758814 ~ 2763187 (-) True CI01180000_02758855_02763187
CI01180000_02644087_02659250.mRNA mRNA downstream 356554 2643527 ~ 2659455 (-) True CI01180000_02644087_02659250
CI01180000_03023998_03049321.mRNA mRNA upstream 4163 3023838 ~ 3049321 (-) True CI01180000_03023998_03049321
CI01180000_03054067_03071659.mRNA mRNA upstream 33670 3053345 ~ 3071659 (-) True CI01180000_03054067_03071659
CI01180000_03119632_03122277.mRNA mRNA upstream 99797 3119472 ~ 3124069 (-) True CI01180000_03119632_03122277
CI01180000_03127734_03141242.mRNA mRNA upstream 108059 3127734 ~ 3141242 (-) False CI01180000_03127734_03141242
CI01180000_03156666_03178903.mRNA mRNA upstream 136150 3155825 ~ 3178903 (-) True CI01180000_03156666_03178903
TU801372 other downstream 22145 2987081 ~ 2993864 (-) False CI01180000_02988807_02995955
TU801373 other downstream 22145 2987081 ~ 2993864 (-) False CI01180000_02988807_02995955
TU801374 other downstream 22145 2987081 ~ 2993864 (-) True CI01180000_02988807_02995955
TU801369 other downstream 164093 2771047 ~ 2851916 (-) True G680506
TU801392 other downstream 399253 2616354 ~ 2616756 (-) True G680525
TU801483 other upstream 221666 3244350 ~ 3244957 (-) True G680603
TU804315 other upstream 1776585 4796260 ~ 4797842 (-) True CI01180000_04796238_04797552
TU804622 other upstream 2598532 5618207 ~ 5619271 (-) True G683394
TU804519 other upstream 2731369 5751044 ~ 5755526 (-) False G683294
TU804922 other upstream 3742400 6762075 ~ 6762844 (-) True G683673

Expression Profile