CI01180000_03023998_03049321 (SRF)


Basic Information

Item Value
gene id CI01180000_03023998_03049321
gene name SRF
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3023838 ~ 3049321 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_03023998_03049321.mRNA
GAAAGCGCGTCTCTCGCGGAGCTCCAGGAGGAGGTGAAGCTGGAGAGAAAGTGGGAGTGAAGCGGGTAGAAGGCGCTCAGGTTCAGCATCACTTCTCAAAGTTTCACGCAGCAGACTCTGTTTGTTTACCTTCCCGCGGGAACGTGTGTATGAGCGCCGGGATGCTATCCAGCCAGACCGGAGCGGCTCTGACTGGAACCGGATCAGCGGCAGGGAAGAGCGCAGGCCACGGCGCGGTGGTGATCGGCGCCGGGGTTCGGACGGGACTCGTCCGCTCCGCTCCAGCGGGGATGCTCGGGGGTAACGGAGCCGCCAGAGGAGGCGTCCGGCCGGTGAACGCGAGCGGACTGGGGCCGCTGCAAGCCGGAGGGATGGTGGGAGGTTTGAGATTCGAGCCGGATAAACACGGACCCCCACACGTGTGCAGCGGCTCTGACGCGGACTCCGACTCGGGCGATGAGGACGAGCACATGGGGTCAGTTGGGGACGGCCGGAGGGGAAGCGGCGTCAAGCGGGAGAGAGCAGAGATGGAGGCGGCGATGGTCGCGCAGGAGGCCGGCTTGTCCTCGGGGGGGTTCGGGGTGCTCGCGAGTGGAGTGGCCGGAGCGAAACCAGGCAAGAAGACCCGGGGGAGAGTCAAGATAAAGATGGAGTTTATAGACAACAAACTGCGGCGGTACACGACCTTCAGCAAGCGGAAGACGGGCATCATGAAGAAGGCGTACGAGCTCTCCACACTCACGGGAACTCAAGTCCTGCTGTTAGTGGCCAGCGAGACGGGTCACGTCTACACGTTCGCCACACGTAAGCTGCAGCCCATGATCACCAGCGAGACGGGTAAAGCGCTGATCCAAACCTGCCTGAACTCTCCGGACTCTCCACCTCGATCCGACCCGTCCACGGACCAGAGGATGAGCGCCACGGGCTTCGAGGAGACCGACCTCACCTACCAGGTGTCTGAGTCTGAGAGTCTTGGAGAAACCAAGGCAGTCTGCCTTTCTTTACTGTTTACTAGAGTGATTCACCTCTCCTCAGAGCAGATAGATAGACGCTCTGAAACCGGCCTTCACCGTGGCCAGTCTGCCGGGCAGCACCGGCGCACCGCCCACCGTCCCCACCACCTCCACCAGCATGCAGGTCAGCAGCGGCCCGTCCTTCCCCATCACCAACTATCTGGCTCCCGTCTCGGCCAGCGGGAACGCCAACGGCACGGTGCTGAAGAGCGCAGGAGCCTCTGGAGGAGTCATGCAGCTGCCCAGTGGATTCACCTTCATGTCAGGTCATATATTTCTGGCACATGCGGTCAGAGCTGCTGCTCGCAGTTTGACTGTTTTCCTGTGAATATGTTTCCTGCGTCAGTGTGTCGCAGCTGTTCAAGGCTCGGCAGGTGCGACACAATCGGCACCTTAAACACCTGCTGCTGCTCTCCGTTTGCTCCCGGAACTCCCACGATTCCTCTGAGTCAGCTGCAGCAGCATTCGTCCAGCGCCACACAAGCGCAGCAGGGTCAGCAGGCCGTGTTCCGCCTGCCCGCCACCGTCTCACTCACTGGCGGTGCGATGCCCCAGCAGCTCCAGACCATCCAGGTCCAGTCCAGCAGCTCTGACAGCAGTCCAGAGATGTCTCAGACCAGCACTGCATCCACAGGCACAGTCAGTCTCCCAGCAACCATCGTCACGACGTCAGTGCCCACCTCCATGTCGGGTCACATGATGTATCCCAGCCCACACACGGTCATGTACGCGTCGGCCCCCACGCTGACAGACGGGGGTCTGGCTGTGCTAAACGCCTTCTCACAGGGTCCGTCTGCGATGCAGGTGTCACACGCGCAGACTCAGGACACGGGTTCCCGTCTCAGCGGTGCAGCTTCACCCAGTACGGCAAGATCAACATTTCACAAGTGAAACTCTCAATATTCTCTCATTACCCAGCATGTCACTGACTGCACTAATGCACCGCGGCCTGCTGGAGGCGCTGTGATCCCAGCAGCACTGCATGAGCACCAGCGCACCTTCCTTCCTTTAGAACATTGAATTTTCACAAACTGACAAGCTGAAAAATAAAT

Function

symbol description
srf Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; protein homodimerization activity; and serum response element binding activity. Involved in several processes, including cell migration involved in sprouting angiogenesis; negative regulation of amyloid-beta clearance; and regulation of transcription, DNA-templated. Acts upstream of or within positive regulation of cell differentiation; positive regulation of transcription by RNA polymerase II; and trophectodermal cell differentiation. Located in nucleus. Implicated in cardiomyopathy and lymphangioleiomyomatosis. Biomarker of congestive heart failure and lymphangioleiomyomatosis.

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K04378 SRF; serum response factor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_03023998_03049321.mRNA True 2065 mRNA 0.60 10 3023838 3049321

Neighbor

gene id symbol gene type direction distance location
CI01180000_03016426_03018342 NA coding downstream 5496 3014433 ~ 3018343 (-)
CI01180000_02988807_02995955 NA coding downstream 26437 2987081 ~ 2997401 (-)
CI01180000_02894674_02906257 NA coding downstream 117539 2894529 ~ 2906299 (-)
CI01180000_02880794_02889498 PWWP2B coding downstream 133880 2880139 ~ 2889958 (-)
CI01180000_02758855_02763187 NA coding downstream 260651 2758814 ~ 2763187 (-)
CI01180000_03054067_03071659 NA coding upstream 4024 3053345 ~ 3071659 (-)
CI01180000_03119632_03122277 NA coding upstream 70151 3119472 ~ 3124069 (-)
CI01180000_03127734_03141242 KLC1B, KLC4 coding upstream 78413 3126289 ~ 3141242 (-)
CI01180000_03156666_03178903 NA coding upstream 106504 3155825 ~ 3178903 (-)
CI01180000_03201997_03203649 LARP7 coding upstream 151689 3201010 ~ 3204182 (-)
G680593 NA non-coding downstream 121169 2902394 ~ 2902669 (-)
G680590 NA non-coding downstream 128070 2895555 ~ 2895768 (-)
G680587 NA non-coding downstream 176277 2844897 ~ 2847561 (-)
G680564 NA non-coding downstream 256398 2767334 ~ 2767440 (-)
G680553 NA non-coding downstream 340195 2682959 ~ 2683643 (-)
G680619 NA non-coding upstream 2220 3051541 ~ 3052279 (-)
G680649 NA non-coding upstream 147607 3196928 ~ 3197254 (-)
G680665 NA non-coding upstream 214514 3263835 ~ 3264983 (-)
G680673 NA non-coding upstream 230910 3280231 ~ 3285385 (-)
G680506 NA other downstream 171922 2771047 ~ 2851916 (-)
G680525 NA other downstream 407082 2616354 ~ 2616756 (-)
CI01180000_01776944_01781186 NA other downstream 1242350 1776872 ~ 1781339 (-)
CI01180000_03242704_03242928 YPEL5 other upstream 192020 3241341 ~ 3242929 (-)
CI01180000_04796238_04797552 NA other upstream 1746939 4796176 ~ 4797842 (-)
G683394 NA other upstream 2568886 5618207 ~ 5619271 (-)
G683294 NA other upstream 2701723 5751044 ~ 5755526 (-)
G683673 NA other upstream 3712754 6762075 ~ 6762844 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006996 srfb coding NC_007124.7 CM002897.2 51909828 ~ 51922290 (-)