G680506


Basic Information

Item Value
gene id G680506
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 2771047 ~ 2851916 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU801369
CGCAGGACTCACTCCAGCAGCGGTGTGTTCTCCCTCAACAAACGCGAGCAATGCGCGCACGGGAGAACCGAACGACAGCGAAACACGCTCCACAGACCGGCGCTCGCCGCGGATTAAACGGGGAAAGTCTTCAAATCATGGCCGAGACGGCGAAGAAGTAAAGCCTGACGCGTTTGAGTACGGACCGCGCTCTGATTTTGCGTACTAGACGCGCACGAGTATGCACGAGCCCAGCTGATCGAGACTCGAACCCGCAGCGTTTAACCCGACGAACCACTACTCGACTCCATAACACTGCTCGTTCCAGAAACGGCTCAAATTAGCTCATTAGTTCGGATCGCGAGCTAATTAATGATGGCGGGGAAGCTGACAGCGCAGGGCGCGGGAATATTGCTGGTTACTGCCAACGTTGGATCACTGTTTGAAGATCCGGAGAACCTGCAGAAGGCGTGGCTGCGGGAGTTTTGCCAGACTGTTCAAGCACACAGGCCGCACTTTGTGGCGGTTCACTGTCAGGAAGTAGGTGGGAAGAACTACGAAGCATCCATGGCACACGTGGACAGCTTCATCAAAGAGCTGCTGTCCAGCGACGCCATGAAGGACTTCAGCCGTGCGCGTGTCTACCTCGACAAGAACTACAAATCCCAGGAGCAGTTCACAGCATTAGGATGTTGCTACTTCCTCCATGAATCCTTGAAAAACATCCAGCAGTTTGATTTCAAAGGTACGTGTGTCCCTTTAATCTCATCAATCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU801369 True 755 TUCP 0.54 5 2771047 2851916

Neighbor

gene id symbol gene type direction distance location
CI01180000_02758855_02763187 NA coding downstream 7860 2758814 ~ 2763187 (-)
CI01180000_02644087_02659250 VALOPA coding downstream 111592 2643527 ~ 2659455 (-)
CI01180000_02477744_02479991 NA coding downstream 290677 2477665 ~ 2480370 (-)
CI01180000_02452405_02470642 NA coding downstream 300322 2452266 ~ 2470725 (-)
CI01180000_02387254_02391366 NA coding downstream 379681 2386037 ~ 2391366 (-)
CI01180000_02880794_02889498 PWWP2B coding upstream 28223 2880139 ~ 2889958 (-)
CI01180000_02894674_02906257 NA coding upstream 42613 2894529 ~ 2906299 (-)
CI01180000_02988807_02995955 NA coding upstream 135552 2987081 ~ 2997401 (-)
CI01180000_03016426_03018342 NA coding upstream 162778 3014433 ~ 3018343 (-)
CI01180000_03023998_03049321 SRF coding upstream 171922 3023838 ~ 3049321 (-)
G680564 NA non-coding downstream 3607 2767334 ~ 2767440 (-)
G680553 NA non-coding downstream 87404 2682959 ~ 2683643 (-)
G680101 NA non-coding downstream 269211 2501523 ~ 2501836 (-)
G680039 NA non-coding downstream 602180 2168341 ~ 2168867 (-)
G680038 NA non-coding downstream 602733 2168024 ~ 2168314 (-)
G680590 NA non-coding upstream 43639 2895555 ~ 2895768 (-)
G680593 NA non-coding upstream 50478 2902394 ~ 2902669 (-)
G680619 NA non-coding upstream 199625 3051541 ~ 3052279 (-)
CI01180000_03127734_03141242 KLC1B, KLC4 non-coding upstream 273551 3126289 ~ 3141242 (-)
G680649 NA non-coding upstream 345012 3196928 ~ 3197254 (-)
G680525 NA other downstream 154291 2616354 ~ 2616756 (-)
CI01180000_01776944_01781186 NA other downstream 989559 1776872 ~ 1781339 (-)
G679801 NA other downstream 1600519 1169859 ~ 1170528 (-)
CI01180000_03242704_03242928 YPEL5 other upstream 389425 3241341 ~ 3242929 (-)
CI01180000_04796238_04797552 NA other upstream 1944344 4796176 ~ 4797842 (-)
G683394 NA other upstream 2766291 5618207 ~ 5619271 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location