CI01180000_03242704_03242928 (YPEL5)


Basic Information

Item Value
gene id CI01180000_03242704_03242928
gene name YPEL5
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3241341 ~ 3242929 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_03242704_03242928.mRNA
TGGTGAATCTGCAGTACAGCGAGGTGCAGGACCGCGTGATGCTGACCGGCAGACACATGGTGCGTGACGTCAGCTGTAAGAACTGCAACAGCAAGCTGGGCTGGATCTACGAGTTCGCCACCGAGGACAGTCAGCGCTATAAGGAGGGCCGCGTGATCCTGGAGCGGGCGCTGGTGCGGGAGAGCGAGGGCTTCGAGGAGCACGTGCCGTCAGACGCATCCTGAGGTCGCAGCCGTCTGCGTTCGTTCCTTCGCTCGTGAGGATGTTCATACAGCGTGTCTCTCATGAAGAATCCCTCTCCTCGTAGACAAACTCTGATGTGAGGCCAAACAATGAATTTAACGATATAGATTTACAAACAAACATGCAAAATCTCTTCTTTAATTGGCTGCAACAACAGAATGACGAGGCCGTCGGCTCATGAAGGGATGTGAATTCATATTATTTCCATAAACATTGACAGAAATTCATATGCTCATGGTTTCTTCATGTTTGACACATTTTTCCTCTCTGTAAGTGTGGCGTTCTGTTTGAGCCAAAAAACGGCTTTGTACAACACGTTTGTCTGTAGTTATTGCTGTTGTTTTGTTTGTGTCAACGCATTTTACAGATATCCAGATGAACAAATTATTATTGACGAATCTAATCATTCTGTTTGTTTTACTGGATCTCAGTAAAATGTGTTGCATAACGTTCACCGGGAGCAGAAACTGATAAAGCATAAAACTGGGCTGAAGACACGACACAAATAAAA

Function

symbol description
ypel5 Predicted to enable metal ion binding activity. Predicted to be part of ubiquitin ligase complex. Orthologous to human YPEL5 (yippee like 5).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_03242704_03242928.mRNA False 754 mRNA 0.46 1 3242175 3242928

Neighbor

gene id symbol gene type direction distance location
CI01180000_03235330_03238451 NA coding downstream 3724 3234351 ~ 3238451 (-)
CI01180000_03201997_03203649 LARP7 coding downstream 37993 3201010 ~ 3204182 (-)
CI01180000_03156666_03178903 NA coding downstream 63272 3155825 ~ 3178903 (-)
CI01180000_03127734_03141242 KLC1B, KLC4 coding downstream 100933 3126289 ~ 3141242 (-)
CI01180000_03119632_03122277 NA coding downstream 118106 3119472 ~ 3124069 (-)
CI01180000_03356017_03358437 NA coding upstream 111707 3354635 ~ 3358437 (-)
CI01180000_03494947_03507550 ARL3.1.S, ARL3, ARL3.1 coding upstream 251295 3494223 ~ 3507550 (-)
CI01180000_03512441_03530828 MGEA5 coding upstream 268923 3511851 ~ 3530828 (-)
CI01180000_03532881_03543896 NA coding upstream 289794 3532722 ~ 3543896 (-)
CI01180000_03695198_03697316 COMMD8 coding upstream 451895 3694823 ~ 3697316 (-)
G680649 NA non-coding downstream 44921 3196928 ~ 3197254 (-)
G680619 NA non-coding downstream 189896 3051541 ~ 3052279 (-)
G680593 NA non-coding downstream 339506 2902394 ~ 2902669 (-)
G680590 NA non-coding downstream 346407 2895555 ~ 2895768 (-)
G680665 NA non-coding upstream 20907 3263835 ~ 3264983 (-)
G680673 NA non-coding upstream 37303 3280231 ~ 3285385 (-)
G682663 NA non-coding upstream 182581 3425509 ~ 3426343 (-)
G682686 NA non-coding upstream 235042 3477970 ~ 3478711 (-)
G682687 NA non-coding upstream 235913 3478841 ~ 3480137 (-)
CI01180000_03016426_03018342 NA other downstream 222500 3014433 ~ 3018343 (-)
CI01180000_02988807_02995955 NA other downstream 248311 2987081 ~ 2997401 (-)
G680506 NA other downstream 390259 2771047 ~ 2851916 (-)
G680525 NA other downstream 625419 2616354 ~ 2616756 (-)
CI01180000_01776944_01781186 NA other downstream 1460687 1776872 ~ 1781339 (-)
CI01180000_04796238_04797552 NA other upstream 1553332 4796176 ~ 4797842 (-)
G683394 NA other upstream 2375279 5618207 ~ 5619271 (-)
G683294 NA other upstream 2508116 5751044 ~ 5755526 (-)
G683673 NA other upstream 3519147 6762075 ~ 6762844 (-)
G684018 NA other upstream 4160219 7403147 ~ 7413132 (-)

Expression


Co-expression Network