G682663


Basic Information

Item Value
gene id G682663
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3425509 ~ 3426343 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU803777
GTACATACTGATGTAATCCAGAGGATCTGGACCCCCTAACCTGAAAAGAGGATTATGAGAGTAAAAAGTGATTTTTATGTGTGCGTATCAAGCAACAACATAAAACTGGAATGCTTCAGGCGTCTCACCAATACTTCACAATGGCTGTGACTTGCAGAGGGTTCGCCTGATCGGGATACAGGCGCCTGCATTCCCCATAAATGGCCTGCAATCCCGGGGGAAAGAGCGAGGCGAGGCCGAGGTGCGCTGCTGCTCCGCTGCTAGGCCGCATCTCATCCATCCCCACACGGCCGCACCAAACAGTGAAAAAAGTTGTCGAAAAGCAAGAAAATTGGGTATTCTTTTCAACTTCCGATTCAATCGCTGATATTGGAAATATGATTTGTAACACTTTTCCTCCTCTGTTTATCCCCTGTTGCAGTTTTTCCTCTGTGGTTTGATGTCCAGAAAGGGGACGTGACCAACACTTTGACTGACACTTGATTAACCCAATCAGAACAGCCGTTAGAAAGACACGACATGAGAGCCACGATGCGTTTGGACGAATGTATTGCGATCAATGAATTTGTTAGTTGTTGCTCCATAAGGAGGTGGGGCTCAGAGACATCCATAAGGAATATGCCATTCACATGAACACTACTGTTTCTGTTATTCTTATTTCTTTATTAGCTTTGCGACATTTAAAGACGAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU803777 True 692 lncRNA 0.45 2 3425509 3426343

Neighbor

gene id symbol gene type direction distance location
CI01180000_03356017_03358437 NA coding downstream 67072 3354635 ~ 3358437 (-)
CI01180000_03242704_03242928 YPEL5 coding downstream 182581 3241341 ~ 3242929 (-)
CI01180000_03235330_03238451 NA coding downstream 187058 3234351 ~ 3238451 (-)
CI01180000_03201997_03203649 LARP7 coding downstream 221327 3201010 ~ 3204182 (-)
CI01180000_03156666_03178903 NA coding downstream 246606 3155825 ~ 3178903 (-)
CI01180000_03494947_03507550 ARL3.1.S, ARL3, ARL3.1 coding upstream 67880 3494223 ~ 3507550 (-)
CI01180000_03512441_03530828 MGEA5 coding upstream 85508 3511851 ~ 3530828 (-)
CI01180000_03532881_03543896 NA coding upstream 106379 3532722 ~ 3543896 (-)
CI01180000_03695198_03697316 COMMD8 coding upstream 268480 3694823 ~ 3697316 (-)
CI01180000_03766003_03784047 ENPEP coding upstream 339388 3765731 ~ 3784406 (-)
G680673 NA non-coding downstream 140124 3280231 ~ 3285385 (-)
G680665 NA non-coding downstream 160526 3263835 ~ 3264983 (-)
G680649 NA non-coding downstream 228255 3196928 ~ 3197254 (-)
CI01180000_03127734_03141242 KLC1B, KLC4 non-coding downstream 295683 3126289 ~ 3141242 (-)
G680619 NA non-coding downstream 373230 3051541 ~ 3052279 (-)
G682686 NA non-coding upstream 51627 3477970 ~ 3478711 (-)
G682687 NA non-coding upstream 52498 3478841 ~ 3480137 (-)
G682688 NA non-coding upstream 55212 3481555 ~ 3482081 (-)
G682691 NA non-coding upstream 59069 3485412 ~ 3485660 (-)
G682692 NA non-coding upstream 60806 3487149 ~ 3487377 (-)
CI01180000_03016426_03018342 NA other downstream 405834 3014433 ~ 3018343 (-)
CI01180000_02988807_02995955 NA other downstream 431645 2987081 ~ 2997401 (-)
G680506 NA other downstream 573593 2771047 ~ 2851916 (-)
G680525 NA other downstream 808753 2616354 ~ 2616756 (-)
CI01180000_04796238_04797552 NA other upstream 1369917 4796176 ~ 4797842 (-)
G683394 NA other upstream 2191864 5618207 ~ 5619271 (-)
G683294 NA other upstream 2324701 5751044 ~ 5755526 (-)
G683673 NA other upstream 3335732 6762075 ~ 6762844 (-)
G684018 NA other upstream 3976804 7403147 ~ 7413132 (-)

Expression


Co-expression Network