RNA id: TU801374


Basic Information

Item Value
RNA id TU801374
length 1063
RNA type TUCP
GC content 0.46
exon number 4
gene id CI01180000_02988807_02995955
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 2987081 ~ 2997401 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCACCCGCTCCGTTCTTCCCTCCTCCTCCAGATAGAGAACACTTTTGTTCTGTGTTTTCATCAGGAAACCAGTGAATCGAGGGCGAGGGACAGCGTGACAGAAGCAGGAGAGACGCTTCAGTGTAAACGTGATATTCTGCTCTTCATTCTGCTGGTTTCTCGTCAGTGTTTGTGACAGACGTCACATCTCTCTTCTGCAGGTCCGTCATGCCCTGGTCAACACGTGTCACTCTTCTGATGCTCCTCATTGGTCAGATTTCCGCAGGACCAGAGACGAGCAGCAGCTCAAACCCCTGTCAGGACCAGAAGGCTCTTCATGAGCGAATGGACAGCGTAGAGAAGCGGCTGGATGAAGGCGTTCAGAAGCTGCAGGCTGAACTGGCGCTTCTGCTGGAGGCGGTGGAAGCACGTGAGTGGAGCCCCCTGCTGGACGAGCCGCGCATAGACATACTGGACGAGCCTCCTGCACCGTGATCCTGCTGATCATCACAGGTCACAACAAACACATCCGCCTCATATATGGTGTGAATGTGAGCAGACGGCAGGAGATCATGTTTATATAGAAGCAGGAGAGAGAAAACATCTTGTTGCTTTGCTGACATTTCAATCCCTCACATGATACAGAAACACACACTGTGAAATCTTCACACACACATACTGTATTTAGAAATAAACAGACACAAGAGCACGTTAATACTTTATTCATACTTTAATGATCGTCAAAACAATCTATGGGTTGCCAAAATATTCAAGAGAATCTATGTTTACGTACAGTATCATGCCGTCCACATTACAATGGAAAACAAGGTTAAAGTCAGTCATCTGGTCTTCATCGATCAGTCCTAAAGGATTCATTAGAGACTGAGCAGAAACTGGACTCATCCGTGCAAAAACACACATCATCTGATATGAATCAAACACACACACACACGCTTCTGCTCGAATCCTCGATTCACTGGAACATGCAGGACTTCAGATTCACCAATGAATCTTTCACACCTCGGACTAAATGTAACTTTTTATAGCATTTCAAAAACATTCCATGATTTTACTTATTACAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU801473 lncRNA downstream 84412 2902394 ~ 2902669 (-) True G680593
TU801470 lncRNA downstream 91313 2895555 ~ 2895768 (-) True G680590
TU801466 lncRNA downstream 139520 2844897 ~ 2847561 (-) True G680587
TU801443 lncRNA downstream 219641 2767334 ~ 2767440 (-) True G680564
TU801421 lncRNA downstream 303438 2682959 ~ 2683643 (-) True G680553
TU801515 lncRNA upstream 57677 3051541 ~ 3052279 (-) True G680619
TU801516 lncRNA upstream 131603 3125467 ~ 3126122 (-) True G680620
TU801547 lncRNA upstream 203064 3196928 ~ 3197254 (-) True G680649
TU801563 lncRNA upstream 269971 3263835 ~ 3264983 (-) True G680665
TU801571 lncRNA upstream 286367 3280231 ~ 3285385 (-) True G680673
CI01180000_02894674_02906257.mRNA mRNA downstream 80782 2894529 ~ 2906299 (-) True CI01180000_02894674_02906257
CI01180000_02880794_02889498.mRNA mRNA downstream 97123 2880139 ~ 2889958 (-) True CI01180000_02880794_02889498
CI01180000_02758855_02763187.mRNA mRNA downstream 223894 2758814 ~ 2763187 (-) True CI01180000_02758855_02763187
CI01180000_02644087_02659250.mRNA mRNA downstream 327626 2643527 ~ 2659455 (-) True CI01180000_02644087_02659250
CI01180000_02477744_02479991.mRNA mRNA downstream 506711 2477665 ~ 2480370 (-) True CI01180000_02477744_02479991
CI01180000_03016426_03018342.mRNA mRNA upstream 20830 3014694 ~ 3018342 (-) False CI01180000_03016426_03018342
CI01180000_03023998_03049321.mRNA mRNA upstream 29974 3023838 ~ 3049321 (-) True CI01180000_03023998_03049321
CI01180000_03054067_03071659.mRNA mRNA upstream 59481 3053345 ~ 3071659 (-) True CI01180000_03054067_03071659
CI01180000_03119632_03122277.mRNA mRNA upstream 125608 3119472 ~ 3124069 (-) True CI01180000_03119632_03122277
CI01180000_03127734_03141242.mRNA mRNA upstream 133870 3127734 ~ 3141242 (-) False CI01180000_03127734_03141242
TU801369 other downstream 135165 2771047 ~ 2851916 (-) True G680506
TU801392 other downstream 370325 2616354 ~ 2616756 (-) True G680525
TU800691 other downstream 1205593 1781450 ~ 1781488 (-) True G679907
TU800690 other downstream 1205796 1778592 ~ 1781285 (-) False CI01180000_01776944_01781186
TU800565 other downstream 1816553 1169859 ~ 1170528 (-) True G679801
TU801485 other upstream 20569 3019498 ~ 3019675 (-) False G680604
TU801487 other upstream 20803 3019498 ~ 3019675 (-) True G680604
TU801484 other upstream 20828 3019498 ~ 3019675 (-) False G680604
TU801486 other upstream 22145 3019498 ~ 3019675 (-) True G680604
TU801483 other upstream 247477 3244350 ~ 3244957 (-) True G680603

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU141782 True 513 lncRNA 0.59 2 NC_048566.1 21783012 ~ 21783631 (-)
tiger barb (Puntius tetrazona) TU141782 True 5721 lncRNA 0.40 2 NC_056711.1 22114696 ~ 22120442 (-)