RNA id: CI01180000_02644087_02659250.mRNA


Basic Information

Item Value
RNA id CI01180000_02644087_02659250.mRNA
length 1965
RNA type mRNA
GC content 0.44
exon number 6
gene id CI01180000_02644087_02659250
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 2643527 ~ 2659455 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACCACTCCAGACGTGATTCAGGACCACCAAACGCACTCAACAAGTCCACTGGACTCACCCACTTGATTTCAGGACACTGGATTACGCTGCTATAAGGGACAAACAGCGAAATAATCGCATGATACTCATCAGTGCATGCGCCGGATTCGCGATGCACGGTGACTTTCTCCAAATGTAGGTGAGATTCTGCTCGTTCGGCGAGATGGAGTCATTTGCGGTGGCGGTGAACGGTGTTTCTCACACTGAAGATCCGTTCTCCGGACCTCTCACGTTCATCGCGCCCTGGAACTATAAAGTCTTGGCTGCGCTGATGTTCATAGTGACCGTGGTTTCCCTCTGCGAGAACTTCACAGTGATGCTGGTCACATTCCGGTACACACAGCTCAGACAGCCTCTCAATTATATCATCGTCAATTTATCTCTGGCTGACTTTCTTGTGTCGGTGACTGGAGGGACTATAAGTTTTTTAACTAACTACCACGGGTATTTCTTCTTGGGTAAATGGGCTTGTGTTTTGGAGGGCTTTGCAGTCACCTTTTTTGGTATCGTGGCTCTGTGGTCTCTGGCCGTCCTGGCTTTCGAGCGCTTCTTCGTGATCTGTCGGCCCCTGGGGAACATCCGTCTGCGAGGCAAACACGCGGCTCTGGGTCTGCTGTTTGTTTGGACCTTCTCCTTCATCTGGACCATCCCGCCTGTCCTGGGCTGGAGCAGCTACACCGTCAGCAAGATCGGCACCACCTGTGAACCCAACTGGTATTCGGGAAACTTCCACGACCACACCTTCATCATCACTTTCTTCACCACCTGCTTCATTCTTCCGTTGGGAGTGATCATCGTCTGTTACTGCAAACTGATCAGGAAGCTGAGAAAGGTGTCCAACACTCACGGCAGGCTGGGTAATGCCAGGAAACCGGAGCGTCAGGTGACCCGTATGGTGGTTGTGATGATCGTGGCCTTCATGGTGGCCTGGACTCCCTACGCTGCCTTCTCCATTGTGGTTACGGCCCATCCCAGCATTCACCTGGATCCTCGACTGGCAGCCGTTCCAGCGTTCTTCTCCAAAACAGCGGCCGTCTACAACCCCATCATCTATGTGTTCATGAACAAACAGGTCAGGAAGTGTCTGGTTCAGCTCTTGAGCTGCAGTGACGTCACCATTGTCGAGGGTAACATCAACCAGACCACCGAACGCGCTGGCATGACCAATGAGAGCAACACAGGGGAGATGTCCGCCATCGCCGCACGGATCCCCTCGGCTGGAACCGTCCCACCTAAAACAGAGGAGCATCCCAATGAACGGAGCTCATTTGCCAAAATTCCCATTCCTGAGAACAAAGGTGCAACAAAAGCTACTAATAAAAAGTACCGGACTACTTTGAGGCATAAGTGCGATGAATTTTAAAATATTATTTTCATTTATCTTTTGCTTTATTTAGCAACAGTTGCACAGATTATAGATTAATTTGCAATACTATTATTTTATAAAACTAATACAGTAACACTTTATTGAGGCCTTTATGTATATTGCATACATAATGTGCATTGTAATGCATTATATATTTTTGTAAATAATTGTAAGTTAAAATGCATTATATTTGCAGATTTACTTACATCTGAAATTGGTTGTTTGTCATGTGTTTTAATGCATTATATTTTGTAATGTGTAACAATGAATGGATAAGTATTGTAACTGTGGTTACAATTATTAATAAGATCATACAATTCATTATAAGGGATAATGAATGCATTAAATATACATTCATAATGCATTATATATAAAGGCTTCAAGAAAAGTGTTACCACTAATACTATCCTAAAACTGTCCATACTGTGGCAATACCATGGTACTACTATAGTACTTCAATATATGCCATGGTACTAAATTATAACCATATACCATGATATTTACATGGTAAGAATTCATTGGAAGAATGGAATTAACACAATACATGTTTAAATAAAC

Function

GO:

id name namespace
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG:

id description
K04256 OPN3; c-opsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU800919 lncRNA downstream 141691 2501523 ~ 2501836 (-) True G680101
TU800843 lncRNA downstream 474660 2168341 ~ 2168867 (-) True G680039
TU800842 lncRNA downstream 475213 2168024 ~ 2168314 (-) True G680038
TU800840 lncRNA downstream 480258 2163014 ~ 2163269 (-) True G680036
TU800809 lncRNA downstream 555348 2087948 ~ 2088179 (-) True G680006
TU801421 lncRNA upstream 23504 2682959 ~ 2683643 (-) True G680553
TU801443 lncRNA upstream 107879 2767334 ~ 2767440 (-) True G680564
TU801466 lncRNA upstream 185442 2844897 ~ 2847561 (-) True G680587
TU801470 lncRNA upstream 236100 2895555 ~ 2895768 (-) True G680590
TU801473 lncRNA upstream 242939 2902394 ~ 2902669 (-) True G680593
CI01180000_02477744_02479991.mRNA mRNA downstream 163157 2477665 ~ 2480370 (-) True CI01180000_02477744_02479991
CI01180000_02452405_02470642.mRNA mRNA downstream 172802 2452266 ~ 2470725 (-) True CI01180000_02452405_02470642
CI01180000_02387254_02391366.mRNA mRNA downstream 252161 2386037 ~ 2391366 (-) True CI01180000_02387254_02391366
CI01180000_02289935_02296503.mRNA mRNA downstream 345257 2289730 ~ 2298270 (-) True CI01180000_02289935_02296503
CI01180000_02235816_02242284.mRNA mRNA downstream 401243 2234440 ~ 2242284 (-) True CI01180000_02235816_02242284
CI01180000_02758855_02763187.mRNA mRNA upstream 99359 2758814 ~ 2763187 (-) True CI01180000_02758855_02763187
CI01180000_02880794_02889498.mRNA mRNA upstream 220684 2880139 ~ 2889958 (-) True CI01180000_02880794_02889498
CI01180000_02894674_02906257.mRNA mRNA upstream 235074 2894529 ~ 2906299 (-) True CI01180000_02894674_02906257
CI01180000_02988807_02995955.mRNA mRNA upstream 328013 2987468 ~ 2997401 (-) False CI01180000_02988807_02995955
CI01180000_03016426_03018342.mRNA mRNA upstream 355239 3014694 ~ 3018342 (-) False CI01180000_03016426_03018342
TU801392 other downstream 26771 2616354 ~ 2616756 (-) True G680525
TU800691 other downstream 862039 1781450 ~ 1781488 (-) True G679907
TU800690 other downstream 862242 1778592 ~ 1781285 (-) False CI01180000_01776944_01781186
TU800565 other downstream 1472999 1169859 ~ 1170528 (-) True G679801
TU801369 other upstream 111592 2771047 ~ 2851916 (-) True G680506
TU801372 other upstream 327626 2987081 ~ 2993864 (-) False CI01180000_02988807_02995955
TU801373 other upstream 327626 2987081 ~ 2993864 (-) False CI01180000_02988807_02995955
TU801374 other upstream 327626 2987081 ~ 2993864 (-) True CI01180000_02988807_02995955
TU801485 other upstream 354978 3019498 ~ 3019675 (-) False G680604

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00013363 False 1845 mRNA 0.51 5 NC_007124.7 51502950 ~ 51527140 (-)
bowfin (Amia calva) AMCG00002842 True 1167 mRNA 0.55 5 CM030139.1 4253759 ~ 4267239 (+)