RNA id: TU801470



Basic Information


Item Value
RNA id TU801470
length 214
lncRNA type intronic
GC content 0.47
exon number 1
gene id G680590
representative True

Chromosome Information


Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 2895555 ~ 2895768 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCAGTGAATGCAGTTCAACACTTCCATGTTTACTTCCGAATGCCGGCTCAGTATTGGCCAAAGCTGAACAGGTGAGCAGCACGAGGCATGCGTGTGATGCTGATGCAGAAGCCGTCCAATAATGAGTCTGCGTTGTGACTAGAACCTGGAAGCTCTGGACGTAAACAACGTATGAGAATGACACAGAAGAGAAGAGATTGTTGAATAAAGTCGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU801466 lncRNA downstream 47994 2844897 ~ 2847561 (-) True G680587
TU801443 lncRNA downstream 128115 2767334 ~ 2767440 (-) True G680564
TU801421 lncRNA downstream 211912 2682959 ~ 2683643 (-) True G680553
TU800919 lncRNA downstream 393719 2501523 ~ 2501836 (-) True G680101
TU800843 lncRNA downstream 726688 2168341 ~ 2168867 (-) True G680039
TU801473 lncRNA upstream 6626 2902394 ~ 2902669 (-) True G680593
TU801515 lncRNA upstream 155773 3051541 ~ 3052279 (-) True G680619
TU801516 lncRNA upstream 229699 3125467 ~ 3126122 (-) True G680620
TU801547 lncRNA upstream 301160 3196928 ~ 3197254 (-) True G680649
TU801563 lncRNA upstream 368067 3263835 ~ 3264983 (-) True G680665
CI01180000_02880794_02889498.mRNA mRNA downstream 5597 2880139 ~ 2889958 (-) True CI01180000_02880794_02889498
CI01180000_02758855_02763187.mRNA mRNA downstream 132368 2758814 ~ 2763187 (-) True CI01180000_02758855_02763187
CI01180000_02644087_02659250.mRNA mRNA downstream 236100 2643527 ~ 2659455 (-) True CI01180000_02644087_02659250
CI01180000_02477744_02479991.mRNA mRNA downstream 415185 2477665 ~ 2480370 (-) True CI01180000_02477744_02479991
CI01180000_02452405_02470642.mRNA mRNA downstream 424830 2452266 ~ 2470725 (-) True CI01180000_02452405_02470642
CI01180000_02988807_02995955.mRNA mRNA upstream 91700 2987468 ~ 2997401 (-) False CI01180000_02988807_02995955
CI01180000_03016426_03018342.mRNA mRNA upstream 118926 3014694 ~ 3018342 (-) False CI01180000_03016426_03018342
CI01180000_03023998_03049321.mRNA mRNA upstream 128070 3023838 ~ 3049321 (-) True CI01180000_03023998_03049321
CI01180000_03054067_03071659.mRNA mRNA upstream 157577 3053345 ~ 3071659 (-) True CI01180000_03054067_03071659
CI01180000_03119632_03122277.mRNA mRNA upstream 223704 3119472 ~ 3124069 (-) True CI01180000_03119632_03122277
TU801369 other downstream 43639 2771047 ~ 2851916 (-) True G680506
TU801392 other downstream 278799 2616354 ~ 2616756 (-) True G680525
TU800691 other downstream 1114067 1781450 ~ 1781488 (-) True G679907
TU800690 other downstream 1114270 1778592 ~ 1781285 (-) False CI01180000_01776944_01781186
TU800565 other downstream 1725027 1169859 ~ 1170528 (-) True G679801
TU801372 other upstream 91313 2987081 ~ 2993864 (-) False CI01180000_02988807_02995955
TU801373 other upstream 91313 2987081 ~ 2993864 (-) False CI01180000_02988807_02995955
TU801374 other upstream 91313 2987081 ~ 2993864 (-) True CI01180000_02988807_02995955
TU801485 other upstream 118665 3019498 ~ 3019675 (-) False G680604
TU801487 other upstream 118899 3019498 ~ 3019675 (-) True G680604

Expression Profile