RNA id: TU801421


Basic Information

Item Value
RNA id TU801421
length 685
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G680553
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 2682959 ~ 2683643 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATTTATTCATTTTGCAGATGCTTTTATCCAAAGTGACTTACAAGTGAGGAATACAACAAGCAAATCATCGTGAAGAGTCAATAGGCATAAGAAGTGCTTACAATACAAGTTTCAGACATTGCTTAGAGTAGCATAAGCTAGAATAGAGAGGGGTTAAAGGAAAGTGAAAGTATAGGTTTTTTTTTTTTTTTTATGATGAGGTTAAGTGCTCTCAAAAGAGATGAGTTTTCAGCTATCTTTTGAATATTGCCAGGGATTCTGCATTCCGGATGAAGGCGGAGAGATCATTCCAACAGCAAGGAACAGTGAATGAAAATGTTCTGGAGAGTGATTTTGTGCCTCTCTGTGATGGTACCATGAGCCTTTTCTCATTTAGCGATTGCAGGCTTCGGTTAGGGATGTAGACTGGTAAGAATGAGTGGAAGTTGGGGGTGCTGAGCCTGTGGTAAGCAAGGGTCAGTGCCTCGAACTTGATGCAAGCAGCAAGTGGTAACCAGTGCAGAGAGATGAAGAGAGGTGTGACATGATGTTAAAGACAAGATGTGCTGCAGCGTTCTGAATCATTTGTAGGGGTTTGATTGTGCATGATGGAAGTCCAGCCAGAAGAGCATTGCAGTAATCAAGCCTAGAAATGACCAGGGCCTGGACGAGAAGTTGTGTTGCATGCTCCGTTAGAAGAGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU800919 lncRNA downstream 181123 2501523 ~ 2501836 (-) True G680101
TU800843 lncRNA downstream 514092 2168341 ~ 2168867 (-) True G680039
TU800842 lncRNA downstream 514645 2168024 ~ 2168314 (-) True G680038
TU800840 lncRNA downstream 519690 2163014 ~ 2163269 (-) True G680036
TU800809 lncRNA downstream 594780 2087948 ~ 2088179 (-) True G680006
TU801443 lncRNA upstream 83691 2767334 ~ 2767440 (-) True G680564
TU801466 lncRNA upstream 161254 2844897 ~ 2847561 (-) True G680587
TU801470 lncRNA upstream 211912 2895555 ~ 2895768 (-) True G680590
TU801473 lncRNA upstream 218751 2902394 ~ 2902669 (-) True G680593
TU801515 lncRNA upstream 367898 3051541 ~ 3052279 (-) True G680619
CI01180000_02644087_02659250.mRNA mRNA downstream 23504 2643527 ~ 2659455 (-) True CI01180000_02644087_02659250
CI01180000_02477744_02479991.mRNA mRNA downstream 202589 2477665 ~ 2480370 (-) True CI01180000_02477744_02479991
CI01180000_02452405_02470642.mRNA mRNA downstream 212234 2452266 ~ 2470725 (-) True CI01180000_02452405_02470642
CI01180000_02387254_02391366.mRNA mRNA downstream 291593 2386037 ~ 2391366 (-) True CI01180000_02387254_02391366
CI01180000_02289935_02296503.mRNA mRNA downstream 384689 2289730 ~ 2298270 (-) True CI01180000_02289935_02296503
CI01180000_02758855_02763187.mRNA mRNA upstream 75171 2758814 ~ 2763187 (-) True CI01180000_02758855_02763187
CI01180000_02880794_02889498.mRNA mRNA upstream 196496 2880139 ~ 2889958 (-) True CI01180000_02880794_02889498
CI01180000_02894674_02906257.mRNA mRNA upstream 210886 2894529 ~ 2906299 (-) True CI01180000_02894674_02906257
CI01180000_02988807_02995955.mRNA mRNA upstream 303825 2987468 ~ 2997401 (-) False CI01180000_02988807_02995955
CI01180000_03016426_03018342.mRNA mRNA upstream 331051 3014694 ~ 3018342 (-) False CI01180000_03016426_03018342
TU801392 other downstream 66203 2616354 ~ 2616756 (-) True G680525
TU800691 other downstream 901471 1781450 ~ 1781488 (-) True G679907
TU800690 other downstream 901674 1778592 ~ 1781285 (-) False CI01180000_01776944_01781186
TU800565 other downstream 1512431 1169859 ~ 1170528 (-) True G679801
TU801369 other upstream 87404 2771047 ~ 2851916 (-) True G680506
TU801372 other upstream 303438 2987081 ~ 2993864 (-) False CI01180000_02988807_02995955
TU801373 other upstream 303438 2987081 ~ 2993864 (-) False CI01180000_02988807_02995955
TU801374 other upstream 303438 2987081 ~ 2993864 (-) True CI01180000_02988807_02995955
TU801485 other upstream 330790 3019498 ~ 3019675 (-) False G680604

Expression Profile