RNA id: CI01180000_02880794_02889498.mRNA


Basic Information

Item Value
RNA id CI01180000_02880794_02889498.mRNA
length 2891
RNA type mRNA
GC content 0.49
exon number 2
gene id CI01180000_02880794_02889498
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 2880139 ~ 2889958 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTCTTTCTGTCTTTTCTTTTGTCTTTATTGTTTGGTATGTTGTGTAGAATGTGATGTGAAAACTGAGTGTAATCTCAGCCTTTGTTTGTAAAATTGTTAGTTATGACTGCATATATATATATATATATATAATCAATGTGCCTTGTGCTCTAATAGGTGAGTTTACCAGTATGTCCAGGATTGTAAGTCTATGTTCTCTTCACTAAACACACATGCAGTATGCAGATGTGTGTTTGGTGCTGTTGAAGCTCAGATGGAGGTTCTCGTCTTTCTCTGGTGATGTCACCGCGGACGGATCCGTTGTAATCGCGTCGGTGGAGTTGATGGCGTCATTGCGCGTCCTGGCGGAGCCTCCCGAGCGCGCTGACGGATCGCAGTAGCAGCGAAGGCCGACGCGACCGTGGCTCCGGCGGCCGGGATCGAGCGACGCCAACCCGGACACCCGAGCAAGGAAAACATGGAGGCTGTAGCGGAGGAGCTGCGGGCCGGCTCCAGGATCCCGGTGACCGTCGACCAGATCGTCAACGACACGCTGGTGGTGACGCTCACGTACCGAGAGAGGAGCTACACGGGAATCTTACTGGACTGCAGCAGAAAGACTGGGCTGTTTTGCCTTCCAGACATTGTTGGAAAAACAGAAGAGAGCCTCATATTGAGACCAGACTGTGAAGTCTCGAGTGAAGAGGCTTCTTCTAAACCCATTAGTCAGCCTTCACAGCGACCAAAAGATGAGAACACGGAGCCAGCGATGGCACCTCCTGCCCCCGTACCCATCCCAGTACAGCCGGGCCAGCCGACGTACCCTCCGTACTTTGAGGGTGCTCCCTTCCCGCAGCCCATGTGGGTCCGGCACACGTACAACCAGTGGGTTCCTCAACCGCCGCCTCGTCCAATCAAAAGGAAGAAAAGACGAAGTCGAGAGTCTGGAAGGATGACCATGAGCACAATCCGACTGAGACCTCGGCAGGTGTTGTGCGAGAAATGTAAAAACACACTAAACAGCGATGAGGACAGCAAAGATGGACCAACAGCGCCCAAGACGTCCAGGAAAGAGAACGCACCTCAAGAAGACGAGGACACTAAATCAACTCCGGCCAAGAGGAAGGATGATGGGGACAACAACAACAAAGAGTCGAAGAGAAGAGAGGACTCAATGGTCTACGACAGCAAACGCTTTCGAAAGGATAAGAAAGACGATGAGAAGTTTCCCGGAGGGGACGTGATTCCTCACAGTCCTGTAATTAAGATCTCCTATAGCACTCCACAAGGTAAAGGCGAAGTAATGAAGATCCCCTCAAGAGTACACGGTTCTGTCAAACCCTTCTGTCCGAAACAGTTGTTGCAGAATGGCCACGGACAAAGAGACGCCTCCAAGGAATCCCAGAAAGTCGTGCAACCGCCAATGGACGCCATCCGAACAGGTCTTACCATTTCCATTCCCAAACTCAAGCTCCCAAAGTTGGCTAGTCCAGAGGCCCCATCGCCCAAGATACGCTTAAGATCCCGGGCCGACGGAGCGGAGCAGGTGTCCGTGTACGAGGCGGAACTGGTCAGTGGTGCCCAGAGAAGAAGTCCCAGAGTTCCCAGCTGTCAATCTGAGGATGGTGCGGAGAAGAACTCGTTAGAACTTTGGTCAGGTGAGGAAGTCGAACGGCACGGTGACCTGACTTTACTCATTAACTTCCGGAAGAGGAAAGCAGACTCTTCGAGCCTTTCCGTGTGCAGCAGCGACAGTCTAGATGAGTCCAAGTCGTTCAGCTCGGATGGCACGTCGCCAGAACTGTGCGATCTCGCTCCAGGTGACGACATCTCAGTGTCGTCTTCCTCTCAAGGGGAAAGCAAGACTGTTCCACCTCTAACCGTACGACTGCACACTCGCAGCATGACTAAGTGCGTGACCGAGGAAGGTTATGCTGTGACAGTAGGTGATGTTGTTTGGGGAAAGATTCACGGCTTCCCTTGGTGGCCTGCTCGGATACTCAGTATTAGCGGTACTCGTAGAGAAGAAGGCGAGGTTGATGCTCCTTGGCCAGAAGCTAAAGTGTCCTGGTTCGGGTCCCCCACCACCTCCCAACTCTCGGTTGCCAAACTGTCGCCGTTCCGCGAATTCTTCAGGTCACGCTTCAACCGTAAAAAGAAAGGGATGTACCGTCGTGCCATCATGGAGGCCGCCAAGGCAGTGGGACACATGAGCGCGGAAATCACATCTCTACTGGCTCACTGCGAAACTTAGGTAAGTCTTTCTTTGCTTGTCATTACACTGTTAAATGGATTGTTCACCCAAAACTAAAAATTCTGTCATTTATACATTTATATTCATCTTTGAAACACAAATGAAGATATTTTTAATGAATTCTGTCCCTCCATTGAAAGTCTATTCACCCAAAACTCTGATGCTTTAAAACATTCTAAAATAAATCCATTTGTGTTAATGGATGAAAGTCTTATGGGTTTGGAACGACATGAGGGTGAGTACATGACAGAATTTTCATTTTTGGGTGAACTATCCCTAGCCCAAAGCATACTTCGATTTTGACGGAAAGCATAGGAGTACAGCTGTACGCACAACCTTTTGAAGTATATTTCATTTGAAACACAGGTGGTCGACACATGCGGGATAGAGAGTTTCATCCTTGTCCAATGTCTGCGATATTTCTCTGCAGAAGAAAATGTCTTTGTGCTCTGAGTTGCGTGAATCTCTGAACCCTTTCACGCAAGCGCTCACCAACACGGACATCAGTTGTTGTTGCGTCTCCAGTAGTTTGCTGTTGTTGTTTCGCTTATCTGGCAGTTTTGCCACCTTGTGGACCAACTAATCAGTGCAATCCCTAATCCCTAAAGAAAGGCATTGTATTAGTTTCTTTAGTGTTACCCTTAAGTGTAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU801466 lncRNA downstream 32578 2844897 ~ 2847561 (-) True G680587
TU801443 lncRNA downstream 112699 2767334 ~ 2767440 (-) True G680564
TU801421 lncRNA downstream 196496 2682959 ~ 2683643 (-) True G680553
TU800919 lncRNA downstream 378303 2501523 ~ 2501836 (-) True G680101
TU800843 lncRNA downstream 711272 2168341 ~ 2168867 (-) True G680039
TU801470 lncRNA upstream 5597 2895555 ~ 2895768 (-) True G680590
TU801473 lncRNA upstream 12436 2902394 ~ 2902669 (-) True G680593
TU801515 lncRNA upstream 161583 3051541 ~ 3052279 (-) True G680619
TU801516 lncRNA upstream 235509 3125467 ~ 3126122 (-) True G680620
TU801547 lncRNA upstream 306970 3196928 ~ 3197254 (-) True G680649
CI01180000_02758855_02763187.mRNA mRNA downstream 116952 2758814 ~ 2763187 (-) True CI01180000_02758855_02763187
CI01180000_02644087_02659250.mRNA mRNA downstream 220684 2643527 ~ 2659455 (-) True CI01180000_02644087_02659250
CI01180000_02477744_02479991.mRNA mRNA downstream 399769 2477665 ~ 2480370 (-) True CI01180000_02477744_02479991
CI01180000_02452405_02470642.mRNA mRNA downstream 409414 2452266 ~ 2470725 (-) True CI01180000_02452405_02470642
CI01180000_02387254_02391366.mRNA mRNA downstream 488773 2386037 ~ 2391366 (-) True CI01180000_02387254_02391366
CI01180000_02894674_02906257.mRNA mRNA upstream 4571 2894529 ~ 2906299 (-) True CI01180000_02894674_02906257
CI01180000_02988807_02995955.mRNA mRNA upstream 97510 2987468 ~ 2997401 (-) False CI01180000_02988807_02995955
CI01180000_03016426_03018342.mRNA mRNA upstream 124736 3014694 ~ 3018342 (-) False CI01180000_03016426_03018342
CI01180000_03023998_03049321.mRNA mRNA upstream 133880 3023838 ~ 3049321 (-) True CI01180000_03023998_03049321
CI01180000_03054067_03071659.mRNA mRNA upstream 163387 3053345 ~ 3071659 (-) True CI01180000_03054067_03071659
TU801369 other downstream 28223 2771047 ~ 2851916 (-) True G680506
TU801392 other downstream 263383 2616354 ~ 2616756 (-) True G680525
TU800691 other downstream 1098651 1781450 ~ 1781488 (-) True G679907
TU800690 other downstream 1098854 1778592 ~ 1781285 (-) False CI01180000_01776944_01781186
TU800565 other downstream 1709611 1169859 ~ 1170528 (-) True G679801
TU801372 other upstream 97123 2987081 ~ 2993864 (-) False CI01180000_02988807_02995955
TU801373 other upstream 97123 2987081 ~ 2993864 (-) False CI01180000_02988807_02995955
TU801374 other upstream 97123 2987081 ~ 2993864 (-) True CI01180000_02988807_02995955
TU801485 other upstream 124475 3019498 ~ 3019675 (-) False G680604
TU801487 other upstream 124709 3019498 ~ 3019675 (-) True G680604

Expression Profile