CI01180000_04567468_04575805 (GFRA4, GFRA4A)


Basic Information

Item Value
gene id CI01180000_04567468_04575805
gene name GFRA4, GFRA4A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 4567235 ~ 4575805 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_04567468_04575805.mRNA
GGTGCCACGGCTGGTGTTCGGGAGCCGGTGGGATTGTCTGACAGCGGGAGATTCGTGCTCCAGCGACGAGGCATGCAGCCCGCGCTTGAGAACGCTGCGGCAGTGTGTCGCAGGCGGCGGGAGCGTGAAGCTGGGTCCGGGGGCACGCAACCACTGTGAGAACGCAGTGACGGCCCTGCTGTCCAGCCCCCTGCACCGATGCCAGTGCAAACGGGGTATGAAGAGAGAGAAGAACTGTCTTAGTATCTACTGGAGCCTCAAGCAGTCCGTACTGCACGGGCTGAGCTTGGTGGAGAATTACCCCTATGAGCCTGTTGAGCGGGGCTTTGATTATGTTCGCCTGGCCTCCATCGCTGCAGGGTCTGAGGTGGGCATGACAACTGTCAACCGTTGTTTGGACGCCGCCAAGGCCTGTAATGTTGATGAGACATGTCAAAAGCTACGAACGGAGTACGTGTCGGCATGCATCGCCCCATCAGCCCTAGCCGGGCCCTGTAACCGCGCGCGCTGCAGCAAAGCACTGAGAAAGTTCTTCGACCGTGTGCCGCCCGACTACACGCATGAGCTGCTCTTCTGTCCGTGCTCCGACACTGCATGCGCAGAGCGTCGGCGCCAGACCATTGTGCCTGCGTGCTCGTTTGAAGAAAGGGAAAAACCCAATTGCCTGGTCCAGCTTCGGGTTTGTGAGGCCGACTATGTGTGCAAGTCTCGCTGGGCTCAGTTCCAGCACGACTGCCAACCCTCCAAGCTTACTGCCAGCGGCTGCCAGCAAGAAAATTACGGAGCCTGCCTTATTGCATACACCGGCCTGATAGGTGGAATTATGGGAAGGGAAGAGCACTGTGATACACACATGTTTTTGGGGGTTTACTAAACCTTATCAACAATGCATGTGATGCAAACATTCAAAGATTAATCTTAAAGTGTCATTCAAAATGTGGCCTCTCTCTCATTACAAACCTGTGACATTGTCTCTTCAGTGGAATACAAAAGAAGATATTTTGAAGAATGTTTCAAATGTTTTTTATCCATAACATTGGGACGAACTAAGCTTTTAAGCCTTCAGAGAGCAGCCCACATCATTTTTCTTGCATCTCTTGCAATAAAT

Function

symbol description
gfra4a Predicted to enable signaling receptor activity. Predicted to be involved in nervous system development. Predicted to be located in plasma membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Orthologous to human GFRA4 (GDNF family receptor alpha 4).
gfra4 Predicted to enable glial cell-derived neurotrophic factor receptor activity. Predicted to be involved in nervous system development. Predicted to act upstream of or within negative regulation of ossification. Predicted to be located in plasma membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane.

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K19895 GFRA; GDNF family receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_04567468_04575805.mRNA True 1108 mRNA 0.53 5 4567235 4575805

Neighbor

gene id symbol gene type direction distance location
CI01180000_04554549_04560819 NA coding downstream 5463 4553441 ~ 4561772 (-)
CI01180000_04327538_04335433 NA coding downstream 230846 4327360 ~ 4336389 (-)
CI01180000_04131891_04133055 NA coding downstream 434099 4130958 ~ 4133136 (-)
CI01180000_04082957_04114030 FGFR3 coding downstream 453205 4082648 ~ 4114030 (-)
CI01180000_03983803_04002213 WHSC1 coding downstream 564580 3983486 ~ 4002655 (-)
CI01180000_04780398_04786371 AP5S1 coding upstream 204093 4779898 ~ 4786371 (-)
CI01180000_04790491_04793557 NA coding upstream 213733 4789538 ~ 4793664 (-)
CI01180000_04796238_04797552 NA coding upstream 220371 4796176 ~ 4797842 (-)
CI01180000_04833972_04834223 NA coding upstream 257199 4833004 ~ 4836841 (-)
CI01180000_04863395_04878213 NA coding upstream 287243 4863048 ~ 4878213 (-)
G683022 NA non-coding downstream 20336 4544971 ~ 4546899 (-)
G682989 NA non-coding downstream 137760 4428131 ~ 4429475 (-)
G682986 NA non-coding downstream 147203 4418008 ~ 4420032 (-)
G682987 NA non-coding downstream 150360 4413644 ~ 4416875 (-)
G682988 NA non-coding downstream 156753 4410263 ~ 4410482 (-)
G683135 NA non-coding upstream 163705 4739510 ~ 4739998 (-)
G683140 NA non-coding upstream 167678 4743483 ~ 4743800 (-)
G683203 NA non-coding upstream 265670 4841475 ~ 4841688 (-)
G683184 NA non-coding upstream 280378 4856183 ~ 4858174 (-)
G683182 NA non-coding upstream 383397 4959202 ~ 4960925 (-)
CI01180000_03242704_03242928 YPEL5 other downstream 1322278 3241341 ~ 3242929 (-)
CI01180000_03016426_03018342 NA other downstream 1547560 3014433 ~ 3018343 (-)
CI01180000_02988807_02995955 NA other downstream 1573371 2987081 ~ 2997401 (-)
G680506 NA other downstream 1715319 2771047 ~ 2851916 (-)
G680525 NA other downstream 1950479 2616354 ~ 2616756 (-)
G683394 NA other upstream 1042402 5618207 ~ 5619271 (-)
G683294 NA other upstream 1175239 5751044 ~ 5755526 (-)
G683673 NA other upstream 2186270 6762075 ~ 6762844 (-)
G684018 NA other upstream 2827342 7403147 ~ 7413132 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006517 gfra4a coding NC_007124.7 CM002897.2 14191293 ~ 14487524 (-)