CI01180000_04554549_04560819


Basic Information

Item Value
gene id CI01180000_04554549_04560819
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 4553441 ~ 4561772 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_04554549_04560819.mRNA
TACTGCTTTTGCATGCGTAGCAGGGAAGCTCATATGGACACAGGGACACTCAGTGTACACTCTTCAATTGATAGAAAATAGACCCAGGTGATACAATACAAGAGTCAGCAGAGAGACGTATTTGCATCCCAGTTCTTCACAGTCAGCACTATTATTGTGCAATCAGCAGCGCTGAGAGAAAACTCTCTTGATGTAACGTTATGAAGTTTCAATGCGTGTCGGTAATGAGGCATTAACAGTCATCAGGAGCACAGGATATCTTCAGCGGTGTGCTCTGCTCATGGCCCACTGCATCTCTGAGCCACTAATAACAAACACGACCATGTAAACACATCCATTTCACAGGTGGGGTGGTGCTGCAGTCTGACCGCTGAGATCTCTGAGATTAGCTCCAGCTCTGATCCAAAAGCGCTTCAGTGTGATCTTGCTCCTCAAAGGTATTTCCGGCATTTACAAAACTGCAGCGTCAAGTTTACGCCATCCCTCGCTATTCTATCTGCGGGTCTTGGGGCAGTCCGGAGTGCTGGGTCGGTGTGTATGTGTGCTGATTCAAGCCTAAGCGCAGCCTCTGGTGTCTTGGTAATTGAGCGTAATTTGGCTCCCTGCAGTAAAACTAATGGAGCGGAGACAGCCGGAGAGTAGCAAACAGGACAAAAGTAGCACAGGATGGAGGGAAACAGCTGAAAGAGCTTTTTGAGAGTGAGTCCATTGAGGCTAGTCTTCACCTCAGCTGTTACTGAACTAGTTTTGCTGGCTACACCAGCCCCCAAACCATCAGCGTACCCCTGGGACAACGATGAAATACTGGAGAAGTATTACAAGAATTTCTTCATTCAGTCAGACTGTGAAAAGAAGAGCTGAAGTCAGTGGACCAACAGCCAGCAGAACTGGAATTAGATGGAAGTGATTCAGTGAAAGTAGTAAAAGCGTGAAGGTTATGTTTCGGTCCTGAATGAGCGATGAGGGTTTTGATGAGAAATGTGCAGGAAGAGTGACGGCTCATTTCCGGTCTCTGGGTGGGAACGCCATCCTGGCTTTCGGGAACGACACAGACCTGAAATCTGCGACCAACCAAGCTCCGGGTTCCAGTACTAACGCTTACAACCAGATGTTAGTTACCAGCACCGAGACCACCACTACCACCATTGGTGCTGCCATGGAGACCGAGCAGAACATTCTGCGTCCACAGATGCCCACACAGGTTGCAAACAACTACATGGATTAGAGTCAGACATGCCTTTTATTGTATGTCTGTCTGAACAAAGCCATAGATGTGTTTGTCTCATTGCTTAAAGAAACAGCGTAAACCAGCCTACATGATGACTGTTGCTTGTTTCCTTGCCTGGCCAAGCTCAACACACTAGTCTGGTTTTATGCTTTTAGAATGGTTTTGGGATTTGTCAGCTGATCTGCCAGATGGTCGCAAGTTCCGTCATTACCAGTAGAGTTCAACGGGACTGACGACCATAGTTGACCAATGATGCTTTCAAAAAATGCAAGACTAGCAAACCACCTTACTGTAGACTGGCTTAAGCTGTTGTTTTGTTATTTTGTAAAGCAGTGATTCTCAACTTGTTTCAATCAGGACACAGATTTTACATTTGGAACACAATGCCGCAATCATTCAAAACTGAATTTTGAGAGTTTTATGCTCTCAGAAGCCAATCATTTATGCAACTAAACCTGTATTTATAATCAGGTGTGCATTATTTTACCTTGTATAGTTTTGTTCATGCATACATCTAGTAGGGTAAAAGGGAGAAGATGCCCCCCTTAAGAACAATTTGTATTGTTTATCATGTATTGGATGATGATACATCAGCCAATGTGTTATTATAGGAAATAAATAGAAACATTTGCTAATTTAGTTGTTATAACCAAAAAAATTTCAAATATTAAAAGAGGGGTAAAATGGCCCCTACTGGGGTAAGTTGGCCCCCTACCTGGGGTAAGAAGCCCCCCTTGGATCAACTTTTAGAGAATGTATTAAATGACTTTTGATATTCTTATTAGTATTACATTATAATTAATGTAATGTGTCATTAATGCAAAATACTAAATCAACTATTCTATTAAAAAATTTAGTTGAATAATTCAATAGCCGAATACCAGTAAAAGAGCTTATTCTATGACTTATGTACAGGCATATGAATATTTACATATTTAATATTTTATTTACATATTTTAATTTAAGATGTGTCATAATACCAATGAAATCAAATTGAATGATTTTACTCAATTAACCTATATATTGTAATGAAAGGGAAGCTGTCTGAAATGTACATCTAATTTACTTACACCAAGGATCTAATTTGATCTTACTTTAAAATAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_04554549_04560819.mRNA True 2334 mRNA 0.41 3 4553441 4561772

Neighbor

gene id symbol gene type direction distance location
CI01180000_04327538_04335433 NA coding downstream 217052 4327360 ~ 4336389 (-)
CI01180000_04131891_04133055 NA coding downstream 420305 4130958 ~ 4133136 (-)
CI01180000_04082957_04114030 FGFR3 coding downstream 439411 4082648 ~ 4114030 (-)
CI01180000_03983803_04002213 WHSC1 coding downstream 550786 3983486 ~ 4002655 (-)
CI01180000_03824786_03831186 ADH8A coding downstream 722255 3824669 ~ 3831186 (-)
CI01180000_04567468_04575805 GFRA4, GFRA4A coding upstream 5463 4567235 ~ 4575805 (-)
CI01180000_04780398_04786371 AP5S1 coding upstream 218126 4779898 ~ 4786371 (-)
CI01180000_04790491_04793557 NA coding upstream 227766 4789538 ~ 4793664 (-)
CI01180000_04796238_04797552 NA coding upstream 234404 4796176 ~ 4797842 (-)
CI01180000_04833972_04834223 NA coding upstream 271232 4833004 ~ 4836841 (-)
G683022 NA non-coding downstream 6542 4544971 ~ 4546899 (-)
G682989 NA non-coding downstream 123966 4428131 ~ 4429475 (-)
G682986 NA non-coding downstream 133409 4418008 ~ 4420032 (-)
G682987 NA non-coding downstream 136566 4413644 ~ 4416875 (-)
G682988 NA non-coding downstream 142959 4410263 ~ 4410482 (-)
G683135 NA non-coding upstream 177738 4739510 ~ 4739998 (-)
G683140 NA non-coding upstream 181711 4743483 ~ 4743800 (-)
G683203 NA non-coding upstream 279703 4841475 ~ 4841688 (-)
G683184 NA non-coding upstream 294411 4856183 ~ 4858174 (-)
G683182 NA non-coding upstream 397430 4959202 ~ 4960925 (-)
CI01180000_03242704_03242928 YPEL5 other downstream 1308484 3241341 ~ 3242929 (-)
CI01180000_03016426_03018342 NA other downstream 1533766 3014433 ~ 3018343 (-)
CI01180000_02988807_02995955 NA other downstream 1559577 2987081 ~ 2997401 (-)
G680506 NA other downstream 1701525 2771047 ~ 2851916 (-)
G680525 NA other downstream 1936685 2616354 ~ 2616756 (-)
G683394 NA other upstream 1056435 5618207 ~ 5619271 (-)
G683294 NA other upstream 1189272 5751044 ~ 5755526 (-)
G683673 NA other upstream 2200303 6762075 ~ 6762844 (-)
G684018 NA other upstream 2841375 7403147 ~ 7413132 (-)

Expression


Co-expression Network