Gene
RNA
| Item | Value |
|---|---|
| gene id | G683184 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01180000 |
| NCBI id | null |
| chromosome length | 11503085 |
| location | 4856183 ~ 4858174 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU804397 | True | 1992 | lncRNA | 0.38 | 1 | 4856183 | 4858174 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01180000_04833972_04834223 | NA | coding | downstream | 19342 | 4833004 ~ 4836841 (-) |
| CI01180000_04796238_04797552 | NA | coding | downstream | 58351 | 4796176 ~ 4797842 (-) |
| CI01180000_04790491_04793557 | NA | coding | downstream | 62519 | 4789538 ~ 4793664 (-) |
| CI01180000_04780398_04786371 | AP5S1 | coding | downstream | 69812 | 4779898 ~ 4786371 (-) |
| CI01180000_04567468_04575805 | GFRA4, GFRA4A | coding | downstream | 280378 | 4567235 ~ 4575805 (-) |
| CI01180000_04863395_04878213 | NA | coding | upstream | 4874 | 4863048 ~ 4878213 (-) |
| CI01180000_04885766_04904637 | RAB11FIP5A, RAB11FIP5 | coding | upstream | 26765 | 4884939 ~ 4905382 (-) |
| CI01180000_04970618_04977149 | NA | coding | upstream | 112046 | 4970220 ~ 4977149 (-) |
| CI01180000_04978607_04980946 | NA | coding | upstream | 120394 | 4978568 ~ 4980946 (-) |
| CI01180000_04982861_04987087 | NA | coding | upstream | 124554 | 4982728 ~ 4987087 (-) |
| G683203 | NA | non-coding | downstream | 14495 | 4841475 ~ 4841688 (-) |
| G683140 | NA | non-coding | downstream | 112383 | 4743483 ~ 4743800 (-) |
| G683135 | NA | non-coding | downstream | 116185 | 4739510 ~ 4739998 (-) |
| G683022 | NA | non-coding | downstream | 309284 | 4544971 ~ 4546899 (-) |
| G682989 | NA | non-coding | downstream | 426708 | 4428131 ~ 4429475 (-) |
| G683182 | NA | non-coding | upstream | 101028 | 4959202 ~ 4960925 (-) |
| G683183 | NA | non-coding | upstream | 106866 | 4965040 ~ 4965500 (-) |
| G683180 | NA | non-coding | upstream | 109267 | 4967441 ~ 5046813 (-) |
| G683162 | NA | non-coding | upstream | 198098 | 5056272 ~ 5058160 (-) |
| G683267 | NA | non-coding | upstream | 283341 | 5141515 ~ 5141810 (-) |
| CI01180000_03242704_03242928 | YPEL5 | other | downstream | 1611226 | 3241341 ~ 3242929 (-) |
| CI01180000_03016426_03018342 | NA | other | downstream | 1836508 | 3014433 ~ 3018343 (-) |
| CI01180000_02988807_02995955 | NA | other | downstream | 1862319 | 2987081 ~ 2997401 (-) |
| G680506 | NA | other | downstream | 2004267 | 2771047 ~ 2851916 (-) |
| G683394 | NA | other | upstream | 760033 | 5618207 ~ 5619271 (-) |
| G683294 | NA | other | upstream | 892870 | 5751044 ~ 5755526 (-) |
| G683673 | NA | other | upstream | 1903901 | 6762075 ~ 6762844 (-) |
| G684018 | NA | other | upstream | 2544973 | 7403147 ~ 7413132 (-) |
| G684071 | NA | other | upstream | 2648716 | 7506890 ~ 7525654 (-) |
