RNA id: CI01180000_04554549_04560819.mRNA


Basic Information

Item Value
RNA id CI01180000_04554549_04560819.mRNA
length 2334
RNA type mRNA
GC content 0.41
exon number 3
gene id CI01180000_04554549_04560819
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 4553441 ~ 4561772 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACTGCTTTTGCATGCGTAGCAGGGAAGCTCATATGGACACAGGGACACTCAGTGTACACTCTTCAATTGATAGAAAATAGACCCAGGTGATACAATACAAGAGTCAGCAGAGAGACGTATTTGCATCCCAGTTCTTCACAGTCAGCACTATTATTGTGCAATCAGCAGCGCTGAGAGAAAACTCTCTTGATGTAACGTTATGAAGTTTCAATGCGTGTCGGTAATGAGGCATTAACAGTCATCAGGAGCACAGGATATCTTCAGCGGTGTGCTCTGCTCATGGCCCACTGCATCTCTGAGCCACTAATAACAAACACGACCATGTAAACACATCCATTTCACAGGTGGGGTGGTGCTGCAGTCTGACCGCTGAGATCTCTGAGATTAGCTCCAGCTCTGATCCAAAAGCGCTTCAGTGTGATCTTGCTCCTCAAAGGTATTTCCGGCATTTACAAAACTGCAGCGTCAAGTTTACGCCATCCCTCGCTATTCTATCTGCGGGTCTTGGGGCAGTCCGGAGTGCTGGGTCGGTGTGTATGTGTGCTGATTCAAGCCTAAGCGCAGCCTCTGGTGTCTTGGTAATTGAGCGTAATTTGGCTCCCTGCAGTAAAACTAATGGAGCGGAGACAGCCGGAGAGTAGCAAACAGGACAAAAGTAGCACAGGATGGAGGGAAACAGCTGAAAGAGCTTTTTGAGAGTGAGTCCATTGAGGCTAGTCTTCACCTCAGCTGTTACTGAACTAGTTTTGCTGGCTACACCAGCCCCCAAACCATCAGCGTACCCCTGGGACAACGATGAAATACTGGAGAAGTATTACAAGAATTTCTTCATTCAGTCAGACTGTGAAAAGAAGAGCTGAAGTCAGTGGACCAACAGCCAGCAGAACTGGAATTAGATGGAAGTGATTCAGTGAAAGTAGTAAAAGCGTGAAGGTTATGTTTCGGTCCTGAATGAGCGATGAGGGTTTTGATGAGAAATGTGCAGGAAGAGTGACGGCTCATTTCCGGTCTCTGGGTGGGAACGCCATCCTGGCTTTCGGGAACGACACAGACCTGAAATCTGCGACCAACCAAGCTCCGGGTTCCAGTACTAACGCTTACAACCAGATGTTAGTTACCAGCACCGAGACCACCACTACCACCATTGGTGCTGCCATGGAGACCGAGCAGAACATTCTGCGTCCACAGATGCCCACACAGGTTGCAAACAACTACATGGATTAGAGTCAGACATGCCTTTTATTGTATGTCTGTCTGAACAAAGCCATAGATGTGTTTGTCTCATTGCTTAAAGAAACAGCGTAAACCAGCCTACATGATGACTGTTGCTTGTTTCCTTGCCTGGCCAAGCTCAACACACTAGTCTGGTTTTATGCTTTTAGAATGGTTTTGGGATTTGTCAGCTGATCTGCCAGATGGTCGCAAGTTCCGTCATTACCAGTAGAGTTCAACGGGACTGACGACCATAGTTGACCAATGATGCTTTCAAAAAATGCAAGACTAGCAAACCACCTTACTGTAGACTGGCTTAAGCTGTTGTTTTGTTATTTTGTAAAGCAGTGATTCTCAACTTGTTTCAATCAGGACACAGATTTTACATTTGGAACACAATGCCGCAATCATTCAAAACTGAATTTTGAGAGTTTTATGCTCTCAGAAGCCAATCATTTATGCAACTAAACCTGTATTTATAATCAGGTGTGCATTATTTTACCTTGTATAGTTTTGTTCATGCATACATCTAGTAGGGTAAAAGGGAGAAGATGCCCCCCTTAAGAACAATTTGTATTGTTTATCATGTATTGGATGATGATACATCAGCCAATGTGTTATTATAGGAAATAAATAGAAACATTTGCTAATTTAGTTGTTATAACCAAAAAAATTTCAAATATTAAAAGAGGGGTAAAATGGCCCCTACTGGGGTAAGTTGGCCCCCTACCTGGGGTAAGAAGCCCCCCTTGGATCAACTTTTAGAGAATGTATTAAATGACTTTTGATATTCTTATTAGTATTACATTATAATTAATGTAATGTGTCATTAATGCAAAATACTAAATCAACTATTCTATTAAAAAATTTAGTTGAATAATTCAATAGCCGAATACCAGTAAAAGAGCTTATTCTATGACTTATGTACAGGCATATGAATATTTACATATTTAATATTTTATTTACATATTTTAATTTAAGATGTGTCATAATACCAATGAAATCAAATTGAATGATTTTACTCAATTAACCTATATATTGTAATGAAAGGGAAGCTGTCTGAAATGTACATCTAATTTACTTACACCAAGGATCTAATTTGATCTTACTTTAAAATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU804215 lncRNA downstream 6542 4544971 ~ 4546899 (-) True G683022
TU804180 lncRNA downstream 123966 4428131 ~ 4429475 (-) True G682989
TU804176 lncRNA downstream 133409 4418008 ~ 4420032 (-) True G682986
TU804178 lncRNA downstream 136566 4413644 ~ 4416875 (-) True G682987
TU804179 lncRNA downstream 142959 4410263 ~ 4410482 (-) True G682988
TU804341 lncRNA upstream 177738 4739510 ~ 4739998 (-) True G683135
TU804346 lncRNA upstream 181711 4743483 ~ 4743800 (-) True G683140
TU804416 lncRNA upstream 279703 4841475 ~ 4841688 (-) True G683203
TU804397 lncRNA upstream 294411 4856183 ~ 4858174 (-) True G683184
TU804395 lncRNA upstream 397430 4959202 ~ 4960925 (-) True G683182
CI01180000_04327538_04335433.mRNA mRNA downstream 217052 4327360 ~ 4336389 (-) True CI01180000_04327538_04335433
CI01180000_04131891_04133055.mRNA mRNA downstream 420305 4130958 ~ 4133136 (-) True CI01180000_04131891_04133055
CI01180000_04082957_04114030.mRNA mRNA downstream 439411 4082648 ~ 4114030 (-) True CI01180000_04082957_04114030
CI01180000_03983803_04002213.mRNA mRNA downstream 550786 3983486 ~ 4002655 (-) True CI01180000_03983803_04002213
CI01180000_03824786_03831186.mRNA mRNA downstream 722255 3824669 ~ 3831186 (-) True CI01180000_03824786_03831186
CI01180000_04567468_04575805.mRNA mRNA upstream 5463 4567235 ~ 4575805 (-) True CI01180000_04567468_04575805
CI01180000_04780398_04786371.mRNA mRNA upstream 218126 4779898 ~ 4786371 (-) True CI01180000_04780398_04786371
CI01180000_04790491_04793557.mRNA mRNA upstream 227766 4789538 ~ 4793664 (-) True CI01180000_04790491_04793557
CI01180000_04796238_04797552.mRNA mRNA upstream 234404 4796176 ~ 4797832 (-) False CI01180000_04796238_04797552
CI01180000_04833972_04834223.mRNA mRNA upstream 271232 4833004 ~ 4836841 (-) True CI01180000_04833972_04834223
TU801483 other downstream 1308484 3244350 ~ 3244957 (-) True G680603
TU801485 other downstream 1533766 3019498 ~ 3019675 (-) False G680604
TU804315 other upstream 234488 4796260 ~ 4797842 (-) True CI01180000_04796238_04797552
TU804622 other upstream 1056435 5618207 ~ 5619271 (-) True G683394
TU804519 other upstream 1189272 5751044 ~ 5755526 (-) False G683294
TU804922 other upstream 2200303 6762075 ~ 6762844 (-) True G683673
TU805291 other upstream 2841375 7403147 ~ 7413132 (-) False G684018

Expression Profile