RNA id: CI01180000_03824786_03831186.mRNA


Basic Information

Item Value
RNA id CI01180000_03824786_03831186.mRNA
length 1254
RNA type mRNA
GC content 0.47
exon number 9
gene id CI01180000_03824786_03831186
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3824669 ~ 3831186 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGCCACTGCAGGAAAGGTGATCAAATGTCGGGCTGCTGTTGCCTGGGAGCCCAGTGCTCCCCTGATGATGGAGGAAATAGAAGTCGCCCCACCTCAAGAAGGAGAAATAAGGATTAAGGTCGCAGCTACAGGTGTGTGTCACACTGACCTTTACCACCTGTTTGAAGGGAAGGACAAGCGCGGTTTTCCCACAGTGCTGGGACACGAGGGCGCTGGTGTGGTGGAGAGTGTTGGACCTGGAGTCACTGAATTCAAACCAGGTGATAAGGTCATTCCACTCTTCATCTCTCAGTGTGGAGAATGCAGATTCTGCAAGTGTCCAAAAACAAACCTGTGTGACCGCAGCTGGACAAGTAAAAATTACGACATTATGTCTGATCCCACAACACGTTTTACTTGTCGTGGTCAGCCCATCTTGCAGTTCATGGGCACCAGTACCTTCTCTGAGTACACTGTCATGAACCAGATTGCTGTGGCAAAGATTCACGATGATGCTCCACTCGACCGTGTGTGTCTGCTCGGCTGTGGCATCGCTACTGGTTATGGAGCTGCTGTCAACACAGCTGGGGTTACACCAGGCTCAGTGTGTGCAGTCTTTGGACTGGGTGCAGTAGGTCTGGCTGCAGTCATGGGTTGTAAAAATGCCGGAGCCTCTCGCATCTTCGCTGTGGATATTAATGAACAAAAGTTTGAGAAGGCAAAGGTGTTTGGAGCCACTGATTTTCTGAATCCAAAAGCGTATAATAAACCAATCTCTGAAGTACTGGCAGAAATGACCAATGGAGGAGTGGATTTCTCACTCGAGTGTGTGGGCAACACTGAAGTAATGGGGAGCGCGCTGGAGTCGTGTGTTAAAGGTTGGGGTGTGAGTGTTCTGGTTGGATGGACTGATGTGAAGGACTTTTCTGCACGACCAATTCAGCTCATATCTGGAAAAACTTGGAAAGGATCTCTGTTTGGTGGTTTTAAGGGCAAGGACTCTGTTCCAAAACTGGTCCGTGACTACATGTCCGGCAAAATAAAGCTTGACGAGTTTATAACACACAAAATGAGTCTGGAGCAGGTGGGTAACCAGCTTCAAGTAACAGCTTCAAGGATTCTCTTTAATAGCATATTCCAGCCCTCTGCTTTATGAAGTGAGTCACAAGTGCATGTAAACGTTGATGTTTAGCATCAAAAACTGTTAAATTCATCTGCAAGGCAAAATAGTTCTGAGAAGTTTTGCAAGAAAATGTTATCTGTGGCAAATAAAA

Function

GO:

id name namespace
GO:0004022 alcohol dehydrogenase (NAD+) activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU803874 lncRNA downstream 161517 3662735 ~ 3663152 (-) True G682743
TU803870 lncRNA downstream 165559 3658877 ~ 3659110 (-) True G682739
TU803864 lncRNA downstream 172458 3651714 ~ 3652211 (-) True G682733
TU803863 lncRNA downstream 172962 3651362 ~ 3651707 (-) True G682732
TU803857 lncRNA downstream 184062 3640358 ~ 3640607 (-) True G682726
TU803913 lncRNA upstream 13725 3844911 ~ 3845183 (-) True G682781
TU803914 lncRNA upstream 14176 3845362 ~ 3845698 (-) True G682782
TU803915 lncRNA upstream 17615 3848801 ~ 3849054 (-) True G682783
TU803932 lncRNA upstream 46918 3878104 ~ 3878332 (-) True G682799
TU803933 lncRNA upstream 47296 3878482 ~ 3878740 (-) True G682800
CI01180000_03813694_03819279.mRNA mRNA downstream 5352 3813348 ~ 3819317 (-) True CI01180000_03813694_03819279
CI01180000_03789351_03795877.mRNA mRNA downstream 28472 3788671 ~ 3796197 (-) True CI01180000_03789351_03795877
CI01180000_03766003_03784047.mRNA mRNA downstream 40263 3765731 ~ 3784406 (-) True CI01180000_03766003_03784047
CI01180000_03695198_03697316.mRNA mRNA downstream 127353 3694823 ~ 3697316 (-) True CI01180000_03695198_03697316
CI01180000_03532881_03543896.mRNA mRNA downstream 280773 3532722 ~ 3543896 (-) True CI01180000_03532881_03543896
CI01180000_03983803_04002213.mRNA mRNA upstream 152300 3983486 ~ 4002655 (-) True CI01180000_03983803_04002213
CI01180000_04082957_04114030.mRNA mRNA upstream 251462 4082648 ~ 4114030 (-) True CI01180000_04082957_04114030
CI01180000_04131891_04133055.mRNA mRNA upstream 299772 4130958 ~ 4133136 (-) True CI01180000_04131891_04133055
CI01180000_04327538_04335433.mRNA mRNA upstream 496174 4327360 ~ 4336389 (-) True CI01180000_04327538_04335433
CI01180000_04554549_04560819.mRNA mRNA upstream 722255 4553441 ~ 4561772 (-) True CI01180000_04554549_04560819
TU801483 other downstream 579712 3244350 ~ 3244957 (-) True G680603
TU801485 other downstream 804994 3019498 ~ 3019675 (-) False G680604
TU804315 other upstream 965074 4796260 ~ 4797842 (-) True CI01180000_04796238_04797552
TU804622 other upstream 1787021 5618207 ~ 5619271 (-) True G683394
TU804519 other upstream 1919858 5751044 ~ 5755526 (-) False G683294
TU804922 other upstream 2930889 6762075 ~ 6762844 (-) True G683673
TU805291 other upstream 3571961 7403147 ~ 7413132 (-) False G684018

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012610 False 1433 mRNA 0.46 9 NC_007124.7 12653975 ~ 12660318 (-)