RNA id: TU803857


Basic Information

Item Value
RNA id TU803857
length 250
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G682726
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3640358 ~ 3640607 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAGGAAAGCTTTTTGGGGAAATAAATTAGCTCTTACTTCAGAGTAGGGTCACTCTAACCCAGCACAATAGGAACTACCAGTGACCTACAGTAAGTCTATGTTGATTGGTCGAACGCATGCCATACAGAAAAGGAACTACCATTTTTAAAAAGCTAATGTTAATGGGCATTTAACTGTCGCCTTTGCCTGCTTTTCTCAACCTTGATGATATGTAGCACCCCAAGTTGTTGTAGGAGATTTCATCTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU803839 lncRNA downstream 35810 3604181 ~ 3604548 (-) True G682710
TU803826 lncRNA downstream 90424 3549663 ~ 3549934 (-) True G682700
TU803822 lncRNA downstream 92962 3546855 ~ 3547396 (-) True G682699
TU803815 lncRNA downstream 93023 3546855 ~ 3547335 (-) False G682699
TU803810 lncRNA downstream 138449 3501669 ~ 3501909 (-) True G682695
TU803863 lncRNA upstream 10755 3651362 ~ 3651707 (-) True G682732
TU803864 lncRNA upstream 11107 3651714 ~ 3652211 (-) True G682733
TU803870 lncRNA upstream 18270 3658877 ~ 3659110 (-) True G682739
TU803874 lncRNA upstream 22128 3662735 ~ 3663152 (-) True G682743
TU803913 lncRNA upstream 204304 3844911 ~ 3845183 (-) True G682781
CI01180000_03532881_03543896.mRNA mRNA downstream 96462 3532722 ~ 3543896 (-) True CI01180000_03532881_03543896
CI01180000_03512441_03530828.mRNA mRNA downstream 109530 3511851 ~ 3530828 (-) True CI01180000_03512441_03530828
CI01180000_03494947_03507550.mRNA mRNA downstream 132808 3494223 ~ 3507550 (-) True CI01180000_03494947_03507550
CI01180000_03356017_03358437.mRNA mRNA downstream 281921 3354635 ~ 3358437 (-) True CI01180000_03356017_03358437
CI01180000_03242704_03242928.mRNA mRNA downstream 397430 3242175 ~ 3242928 (-) False CI01180000_03242704_03242928
CI01180000_03695198_03697316.mRNA mRNA upstream 54216 3694823 ~ 3697316 (-) True CI01180000_03695198_03697316
CI01180000_03766003_03784047.mRNA mRNA upstream 125124 3765731 ~ 3784406 (-) True CI01180000_03766003_03784047
CI01180000_03789351_03795877.mRNA mRNA upstream 148064 3788671 ~ 3796197 (-) True CI01180000_03789351_03795877
CI01180000_03813694_03819279.mRNA mRNA upstream 172741 3813348 ~ 3819317 (-) True CI01180000_03813694_03819279
CI01180000_03824786_03831186.mRNA mRNA upstream 184062 3824669 ~ 3831186 (-) True CI01180000_03824786_03831186
TU801483 other downstream 395401 3244350 ~ 3244957 (-) True G680603
TU801485 other downstream 620683 3019498 ~ 3019675 (-) False G680604
TU804315 other upstream 1155653 4796260 ~ 4797842 (-) True CI01180000_04796238_04797552
TU804622 other upstream 1977600 5618207 ~ 5619271 (-) True G683394
TU804519 other upstream 2110437 5751044 ~ 5755526 (-) False G683294
TU804922 other upstream 3121468 6762075 ~ 6762844 (-) True G683673
TU805291 other upstream 3762540 7403147 ~ 7413132 (-) False G684018

Expression Profile