RNA id: CI01180000_03512441_03530828.mRNA


Basic Information

Item Value
RNA id CI01180000_03512441_03530828.mRNA
length 3320
RNA type mRNA
GC content 0.45
exon number 16
gene id CI01180000_03512441_03530828
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3511851 ~ 3530828 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGTTCAGAAAGACAAAATAATAGAGTCGTCACAGCCAGAGAATGAAGAAAATCCAGTGCCAACCGAAGCTGTTGCAGATACGCAGTGTCCGGTTGACGAGCCCAGTATCGGGGTTGAGCGAACAGGCCGAAGGAAATTCATTACCGGTGTTGTAGAGGGTTTCTATGGACGGCCATGGACTATGGAACAAAGGAAAGAGCTTTTCAGGAGGCAGCAGAAATGGGGTTTGAACACCTACCTGTATGCCCCCAAAGATGACTACAAACACAGAATGTTTTGGAGGGAAATGTACTCTGTTGAGGAAGCAGGGCAACTCACAACTTTAATAAGTGCTGCTAAAGAGCATGGGATTGAGTTCATTTATGCCATTTCCCCTGGCCTGGACATTACATTCTCAAATCAGAAGGAAGTGTCAACACTTAAAAGGAAGTTAGACCAGGTCTCTCATTTTGGGTGCAAGTCCTTTGCCTTACTGTTTGATGACATTGATCATAACATGTGTCCAGCTGACAAGGAGGTATTCAGCTCTTTTGCACATGCCCAAGTGTCTATCACCAATGAGATCTTCCAGTATTTGGGAGAACCTGATATATTTTTATTTTGCCCAACAGGGTATTGTGGAACATTTTGTTATCCAAATGTGTCACAATCGCCTTACCTACGCACAATAGGTGAAAAGCTGCTTCCTGGTATTGAGGTGCTGTGGACAGGTCCAAAGGTAGTTTCTAAAGACATAACTGTTGAATCTATTGAAGAAGTCACGAAGATACTGAGGAGAGCTCCTGTCATCTGGGACAATATTCATGCTAATGACTATGATCAGAAGAGACTTTTCTTGGGGCCTTATAAAGGAAGGTCCACAGAGCTCATTCCTCGGCTAAAGGGAGTCCTCACCAACCCCAACTGTGAATTTGAGTCCAATTTTGTGGCCATTCACACGTTAGCCACGTGGTATAAGTCTAACATGAATGGAGTGAGAAAAGATGTTGTCATGAGGGACAGTGAAGACAGCACTGTGTCCATCCAGATAAAGCTGGAAAACGAAGGCAGTGATGAGGAGCTAGAAACAGACATCCTCTATAGCCCACAGATCGCGCTCAAGCTGGCTCTCACTGAATGGCTAAGCGAGTTTGGAGTGCCTCATCAGTACAACAGTCGGCAGGTACCTCACAGTGGAACCAAAAGCACTTCTGTGGATGTTCCTGCGCTCACTTCTCCCAGCCTGGGCACTTCCACTACAGTGACTACAGTCTTCCAACAGCCCATCATGAGTCCAGCTGTGCCACTTAGCGATGAACTGCACGTGCTCGGCAAAGAAGAAGAGGTGGAGGTGGAGAAGAAGGAGTCCGATGAAGAACCCATGGAGATGGTTGTGGAGAAACACGACGAGGTGGAGGACAATAAAAATGTCAACCAGATCCTCACAGAGATTGTCAAGGCTAAGATGACAGAAGATCTCAAACCCATGGACACAGACAAAGAGAGCCTGACAGAGTCTAAGTCCCCAGAGATGTCCATTCAAGAGGACTCAGGCAGCGATATTGCACCGATGCAGACTGATGATCAACTCAATAAGGAGGTGTTTGTTCCAGGTCCCAATGAGAAACCACTGTTCGTTGCTGAGGCACTTACCCTGGAGGATTTGACCCTGCTGGCTGAACTCTTCTACCTGCCATACGAACATGGCCCAAAAGCAGTACAGATGCTAAAAGAGTTTAACTGGTTGAGAGCCAATAGCAATTATGTCAGTGTTAACTCCAAAGCAAAGGATCCAGAGAAGGTGACTGAATGGCAATCTAGAGCGGAAAACTTTGAGGAGATGTGCTGCTCCGTCATCCAGATGTTCACCAGACTCTCCAACTCTGCCAACAGGACCATTCTTTATGACCTGTATCCCTATATCTGGGATATAAAGAGTATCATCTCAATGGTGAAATCATTTGTTCAGTGGTTAGGGTGTCGTAGTCAGTCGTCAGCACAGTTCTTAAGTGGCGACCAAGAGCCCTGGGCCTTTAGGGGCGGTCTAGCAGGAGAGTTCCAGGGACTGTTGCCAATTGATGGGGCAAATGATCTTTTCTACCAGCCACCACCATCAATGCCTACTTCCAAAATCTATTCCATAAGGCCATACTTTCCCAAAGACGAGGCTGCCATCTATAAGATCTGCAAGGAGATGTTCACTGAGAGCTGTGATGGCATTTCTTTCCCAGATGAGTCACCGGACCTTATTGGAGACAGGTTAGTGGGAGGTTTTCTGACGCTCAGCCCAGACTATGGCTTTGTGCTTGAGGATGAAGAAGGTATCTGCGGCTATGCTCTGGGCACTGTGGATGTCAAACCTTTTGTGAAGAAATGCCAGATGAGTTGGATTCCGTTCATGCAGGAGAAATACAACAAGCCAGACACGGAGAAGGACCTGTCAGAGGCCGAGGAAATGATGCTAAGTTTCCATGAGGAGGAGGAGGTTTTGCCAGAATCGTTCCTCAGTAACTTCCCATCACTCATTAAAGTGGACATTCACGCAAAGGTTACTGACCCCAGTGTAGCTAAAAGCATGATGGGATGTCTCCTCTCATCGCTGAAAGCTAATGGCTCACATGGTGCTTTCTGTGAGGTCCGGCAGATGGACAAAAGGATGTTGGACTTTTATAGCAAACTGGGCTGCTTTGAAGTGGCCAAAATGGAGGGATTCCCAAAAGACGTTATTATAATGGGGAGGAGTCTGTGAATCTGAGCCGCCTAGAAGAAAAATCGCACAGAAAGAGCCTCCTAGAAAGTGCACAAAGCTTTGGCCCACATTTTAAGGCCCCAACTCGCTACCTGTTCATGTAAATATCACATGTTTTGTAATAGCAACCCTGTAACGGTAGCTTAATTCACATCATTATGCCGAATGCACTTCTAGAATTTTAGGTGCTGTTCATTCACTTTGCCAGTGTGTGGTGGATGATCAAGAGTTTGAACGTGAGTGTGCACATATGGAAATGGAAGAAGAAGTGAGTCTGTAAGAGTGATTCAGGACGCATGACTTACTTTCACTTTTTTCCGGTAGACAGATTGCTTGAGTTGGCCAAGTGCCATTGAACCTACTAAATCTCTTAGATGAGGCCGAGTTGCAGTTTGTGTTCAGCATATGTGCATGTTTAAGTTAATGTCTAGATTCTCCAGACAAAAAACTTGCCATGACTTGATAAGAGATCTTCACTTTACGGTTTTTAATAGTTAATTTCAGTGCTTTACAGTGTTCAAAGCAATAATCCAGAAGGACTTCTTAAAAGTCAGGGTTTGTGTTATTGCTTTTCAGGACATTGTAATAAAT

Function

GO:

id name namespace
GO:0016231 beta-N-acetylglucosaminidase activity molecular_function

KEGG:

id description
K15719 NCOAT, MGEA5; protein O-GlcNAcase / histone acetyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU803810 lncRNA downstream 9942 3501669 ~ 3501909 (-) True G682695
TU803806 lncRNA downstream 24474 3487149 ~ 3487377 (-) True G682692
TU803805 lncRNA downstream 26191 3485412 ~ 3485660 (-) True G682691
TU803802 lncRNA downstream 29770 3481555 ~ 3482081 (-) True G682688
TU803801 lncRNA downstream 31714 3478841 ~ 3480137 (-) True G682687
TU803815 lncRNA upstream 16027 3546855 ~ 3547335 (-) False G682699
TU803822 lncRNA upstream 16027 3546855 ~ 3547396 (-) True G682699
TU803826 lncRNA upstream 18835 3549663 ~ 3549934 (-) True G682700
TU803839 lncRNA upstream 73353 3604181 ~ 3604548 (-) True G682710
TU803857 lncRNA upstream 109530 3640358 ~ 3640607 (-) True G682726
CI01180000_03494947_03507550.mRNA mRNA downstream 4301 3494223 ~ 3507550 (-) True CI01180000_03494947_03507550
CI01180000_03356017_03358437.mRNA mRNA downstream 153414 3354635 ~ 3358437 (-) True CI01180000_03356017_03358437
CI01180000_03242704_03242928.mRNA mRNA downstream 268923 3242175 ~ 3242928 (-) False CI01180000_03242704_03242928
CI01180000_03235330_03238451.mRNA mRNA downstream 273400 3234351 ~ 3238451 (-) True CI01180000_03235330_03238451
CI01180000_03201997_03203649.mRNA mRNA downstream 307669 3201010 ~ 3204182 (-) True CI01180000_03201997_03203649
CI01180000_03532881_03543896.mRNA mRNA upstream 1894 3532722 ~ 3543896 (-) True CI01180000_03532881_03543896
CI01180000_03695198_03697316.mRNA mRNA upstream 163995 3694823 ~ 3697316 (-) True CI01180000_03695198_03697316
CI01180000_03766003_03784047.mRNA mRNA upstream 234903 3765731 ~ 3784406 (-) True CI01180000_03766003_03784047
CI01180000_03789351_03795877.mRNA mRNA upstream 257843 3788671 ~ 3796197 (-) True CI01180000_03789351_03795877
CI01180000_03813694_03819279.mRNA mRNA upstream 282520 3813348 ~ 3819317 (-) True CI01180000_03813694_03819279
TU801483 other downstream 266894 3244350 ~ 3244957 (-) True G680603
TU801485 other downstream 492176 3019498 ~ 3019675 (-) False G680604
TU804315 other upstream 1265432 4796260 ~ 4797842 (-) True CI01180000_04796238_04797552
TU804622 other upstream 2087379 5618207 ~ 5619271 (-) True G683394
TU804519 other upstream 2220216 5751044 ~ 5755526 (-) False G683294
TU804922 other upstream 3231247 6762075 ~ 6762844 (-) True G683673
TU805291 other upstream 3872319 7403147 ~ 7413132 (-) False G684018

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012593 True 5093 mRNA 0.42 16 NC_007124.7 11988833 ~ 12006007 (-)
bowfin (Amia calva) AMCG00003206 True 3669 mRNA 0.49 16 CM030139.1 14499293 ~ 14512805 (-)