RNA id: TU803802


Basic Information

Item Value
RNA id TU803802
length 527
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G682688
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3481555 ~ 3482081 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCAAGTGTGGGTATCCAAAGTGGTCGAAAGTGGACAAGCTCAAAACGTTTTACACCCCGTTTACACCTTCTTCCACTTGTAATCCAATCGACCAAAACTTAATACCAGGTGTAAACGGCCGTACATACAGGTTCTGTATTAAAGTATTGTATGAAAAGTGTTTGTTGCTACATGAAAACATCTTAAATGTCTGTGTATCTGACAAATATATTTCAGCTAATCTACTTAATCTGTGATAAAGTATGCAAACACAGTGGAAGCATCACTACAGACAGCAGAAAGTGTCCAACTTCACGTCTCCATTTTCAACTCCTCCCCTGCCGGCAAATCTTGTCAATCGGTTAAATCCAGCCACATCTAAAGTCAAACAAACCAACTATTTTGCTAAGCAACATTGAATCACACCATATGACCAAAAGCGTGAATCAAATGGTTGACAAATGTGTCTGAATTTATGCATTAAAGGGTTAGTTCACCCAAAAATGAAAATAATGTCATTTATTACTCACCCTCATGTCGTTCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU803801 lncRNA downstream 1418 3478841 ~ 3480137 (-) True G682687
TU803800 lncRNA downstream 2844 3477970 ~ 3478711 (-) True G682686
TU803777 lncRNA downstream 55212 3425509 ~ 3426343 (-) True G682663
TU801571 lncRNA downstream 196170 3280231 ~ 3285385 (-) True G680673
TU801563 lncRNA downstream 216572 3263835 ~ 3264983 (-) True G680665
TU803805 lncRNA upstream 3331 3485412 ~ 3485660 (-) True G682691
TU803806 lncRNA upstream 5068 3487149 ~ 3487377 (-) True G682692
TU803810 lncRNA upstream 19588 3501669 ~ 3501909 (-) True G682695
TU803815 lncRNA upstream 64774 3546855 ~ 3547335 (-) False G682699
TU803822 lncRNA upstream 64774 3546855 ~ 3547396 (-) True G682699
CI01180000_03356017_03358437.mRNA mRNA downstream 123118 3354635 ~ 3358437 (-) True CI01180000_03356017_03358437
CI01180000_03242704_03242928.mRNA mRNA downstream 238627 3242175 ~ 3242928 (-) False CI01180000_03242704_03242928
CI01180000_03235330_03238451.mRNA mRNA downstream 243104 3234351 ~ 3238451 (-) True CI01180000_03235330_03238451
CI01180000_03201997_03203649.mRNA mRNA downstream 277373 3201010 ~ 3204182 (-) True CI01180000_03201997_03203649
CI01180000_03156666_03178903.mRNA mRNA downstream 302652 3155825 ~ 3178903 (-) True CI01180000_03156666_03178903
CI01180000_03494947_03507550.mRNA mRNA upstream 12142 3494223 ~ 3507550 (-) True CI01180000_03494947_03507550
CI01180000_03512441_03530828.mRNA mRNA upstream 29770 3511851 ~ 3530828 (-) True CI01180000_03512441_03530828
CI01180000_03532881_03543896.mRNA mRNA upstream 50641 3532722 ~ 3543896 (-) True CI01180000_03532881_03543896
CI01180000_03695198_03697316.mRNA mRNA upstream 212742 3694823 ~ 3697316 (-) True CI01180000_03695198_03697316
CI01180000_03766003_03784047.mRNA mRNA upstream 283650 3765731 ~ 3784406 (-) True CI01180000_03766003_03784047
TU801483 other downstream 236598 3244350 ~ 3244957 (-) True G680603
TU801485 other downstream 461880 3019498 ~ 3019675 (-) False G680604
TU804315 other upstream 1314179 4796260 ~ 4797842 (-) True CI01180000_04796238_04797552
TU804622 other upstream 2136126 5618207 ~ 5619271 (-) True G683394
TU804519 other upstream 2268963 5751044 ~ 5755526 (-) False G683294
TU804922 other upstream 3279994 6762075 ~ 6762844 (-) True G683673
TU805291 other upstream 3921066 7403147 ~ 7413132 (-) False G684018

Expression Profile