CI01180000_03789351_03795877


Basic Information

Item Value
gene id CI01180000_03789351_03795877
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3788671 ~ 3796197 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_03789351_03795877.mRNA
CTTACATTTGTGAGAGAAAATACTGTAATTAAGATGGAACAGTAATTGATCAAATTTCAGTCAAGTGATAGATTATAAACTTTGCATTGTGAATTTCATATCACTTAGACACTCTATTGGAATTTTATAGGCTATATTCAATTTGGCCATTAAATTAGAAAACACATTAATTCAGTTTAATTGAATTCATCTTCCATTGTAAAGCATCAGTATCAAGTAATGTTTCTCTTTACTACACTGACTATAGGTGTTGATCTGCTTCAGAGTAATCTGAACTAATCCTTTTAGTCTTTGTCTTAATCTACGACAGTGTTTGGGAATGTCACACTCCGACAGAGAGTGGCACTTCTTTCCTGGGACAGTAGTGTATGAGATACTTAGAGCGATGCATCTAGCTCTATATGCAGACCTCACTTTGTGCTTGGCGTTGGTGGTCTGTACTCAGAGTCCATCATGCCCGTCTCTGTGCACCTGTGTGCTCCATGATCGCAGCGATTCCAAAGGACTCAGGATCTTTAGAGGCGCTTTCTCTGCCATGCCAGAACTGCTTTATTTGTGGCTGACATATAACTCCATCACCGTTCTACATCCAAGGAGTTTCACAAACCTGTCTTCCCTTCATGAGTTACGATTGGACGGGAACCTCCTCTCCACCTTCCCCTGGGAGGGACTCAGGGATGTGCCCCGCCTCCGAACACTTGGACTGCACAATAACCGCCTGGCACGAATCCCACCCCTGGCTGCGCGTTACCTTGGCAATGTGACTTATCTGGACCTCTCGAGCAACAAGCTGAGCACCCTGCCTAATGATCTAACTGCTCTCTGGCCTTTCAGTGACGGCACTCAAAGCCAGCGCTCAGTGGTTCTAGGTCTTCAGGACAACCCCTGGGTGTGTGACTGTAGGCTTTCCACCTTGCTTGACATTAGTAAAGCCCCAGAATCCTCTCTGGTCCTGTTGGATCGGTTCCTGACCTGTAGTGAACCGCCAGATCTCGCTGGAGTTCCCTTTCAGAGTGTGGAGCTCACTCGCTGCCGCAGGCCCTACGTGGTGACCTCTGCCACAAAGATCACAGCTTTACTGGGCAGCAATGTCCTACTTCGCTGTGATGCAACAGGACACCCGACTCCAACAATTATGTGGATAAAATCTGCCAGATCTAACCTTTATAACCAAGGTTGTTGTAAGCAGATGCAAAACAGCATTGACACCGAAAGATTGCCCAGAAAACTTTCTGGCTGTGTACAAGAGTCTCCACGTGTGGGAATCCGTTGGTCGGCAGTCAGTCTTAATGGAATATCCTACAGAGATGCAGGGGAGTACCGATGCAGAGCACAAAACATGGCAGGGATATCAGAGGCCATTGTCAGTCTGAATGTGGTCGGGTTAATGGCGGAATATGCAAACTCCAAAAACTCTGATCAACAGCAAACGGTTGCAAAATCAGACTATTCACAGAGGAAACCCAATCAGAAATCCAAAGCCTTACCTCGAAACATGACTGGACAGCCCTCCCTTATAAAGAGAGTCATGAAAATCCCCAAAGCCAGCAGAGACAAAATGAAAAGGGACAGGATAGCTGTACAGAACCTGCCACGGAGACGCTTTTTGATTGCTTCTGAAAATCCACTCCACAAAAGACAAACACCTCATGTCTCCATGTCAATTCACACCTGACACATTTAAATGTGTAAATTCAGGAAGTTTATTTTTTCATATGAATGACCATAACCTTGTATATTTCCTTAATGGAAGGTTGCTTTCATGTATTACACAGCCATGACCAGCAGATGGCAGCTCTGAGCTAAAGACTCTTCATGACAAAAGCTGTTTATTTAAAAAAAAAAATACACTGAAATTGTACTTTTAAAAAAGCTTGTTAAAATGATGTTCCCTCACATGAACCTCTAGTCATATCAGTAACCTAATAAAAGTCACATTGTTACTGTAAAGAATTTATCTGGTGAATAGTATTACTGGTGTATTAGGCTATACAGTACATCAAGTAAATACCTCTTTTATAATGTATGGCTCTATAAATATATGTGAACTTAATAGCTGTTGATGAACAAATTGAGCCAGTATCTGTGTTAAACAGTGTTCGAGTGACAATTTTGCTGATCTGTTTTCTTCTGAAATTACCTTTATATTGGGTCAAATAAGAGTGATGAAATTCAGTGAGATTATTCATCTTAATAGCTGTAAAAGCTTTGTGTCTTTCTTAGATCATTGATACTCCCAGATAAAGATGTTACATCACCATTGTTTCTACGTCTTATTTTATATTTACCGTCAAGTCATCTCACAGACTGATAACAAATGATTTTATGATTATATGATTATGATATGTCAATAAAC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_03789351_03795877.mRNA True 2356 mRNA 0.42 5 3788671 3796197

Neighbor

gene id symbol gene type direction distance location
CI01180000_03766003_03784047 ENPEP coding downstream 4265 3765731 ~ 3784406 (-)
CI01180000_03695198_03697316 COMMD8 coding downstream 91355 3694823 ~ 3697316 (-)
CI01180000_03532881_03543896 NA coding downstream 244775 3532722 ~ 3543896 (-)
CI01180000_03512441_03530828 MGEA5 coding downstream 257843 3511851 ~ 3530828 (-)
CI01180000_03494947_03507550 ARL3.1.S, ARL3, ARL3.1 coding downstream 281121 3494223 ~ 3507550 (-)
CI01180000_03813694_03819279 NA coding upstream 17151 3813348 ~ 3819317 (-)
CI01180000_03824786_03831186 ADH8A coding upstream 28472 3824669 ~ 3831186 (-)
CI01180000_03983803_04002213 WHSC1 coding upstream 187289 3983486 ~ 4002655 (-)
CI01180000_04082957_04114030 FGFR3 coding upstream 286451 4082648 ~ 4114030 (-)
CI01180000_04131891_04133055 NA coding upstream 334761 4130958 ~ 4133136 (-)
G682743 NA non-coding downstream 125519 3662735 ~ 3663152 (-)
G682739 NA non-coding downstream 129561 3658877 ~ 3659110 (-)
G682733 NA non-coding downstream 136460 3651714 ~ 3652211 (-)
G682732 NA non-coding downstream 136964 3651362 ~ 3651707 (-)
G682726 NA non-coding downstream 148064 3640358 ~ 3640607 (-)
G682781 NA non-coding upstream 48714 3844911 ~ 3845183 (-)
G682782 NA non-coding upstream 49165 3845362 ~ 3845698 (-)
G682783 NA non-coding upstream 52604 3848801 ~ 3849054 (-)
G682799 NA non-coding upstream 81907 3878104 ~ 3878332 (-)
G682800 NA non-coding upstream 82285 3878482 ~ 3878740 (-)
CI01180000_03242704_03242928 YPEL5 other downstream 543714 3241341 ~ 3242929 (-)
CI01180000_03016426_03018342 NA other downstream 768996 3014433 ~ 3018343 (-)
CI01180000_02988807_02995955 NA other downstream 794807 2987081 ~ 2997401 (-)
G680506 NA other downstream 936755 2771047 ~ 2851916 (-)
G680525 NA other downstream 1171915 2616354 ~ 2616756 (-)
CI01180000_04796238_04797552 NA other upstream 1000063 4796176 ~ 4797842 (-)
G683394 NA other upstream 1822010 5618207 ~ 5619271 (-)
G683294 NA other upstream 1954847 5751044 ~ 5755526 (-)
G683673 NA other upstream 2965878 6762075 ~ 6762844 (-)
G684018 NA other upstream 3606950 7403147 ~ 7413132 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006503 lrit3b coding NC_007124.7 CM002897.2 12591508 ~ 12602920 (-)