XLOC_006503 (lrit3b)


Basic Information

Item Value
gene id XLOC_006503
gene name lrit3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 12591508 ~ 12602920 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012605
ATGCGCCCACTTCTGTATGCAGATCTCTCGTTGTGCTTGGCTTTGGTGGTCTGTGCTCAGAGTCCAGCATGTCCTTCTCTGTGCACGTGTGTGCTCCAGGGTCGCAGTGATACCAAAGGACTGAGaACTGTGCTCTGCAAGAACCCAGCCTTGACTGCCATTCCAATAGATTTGCCAAATGACACGGTGAAGTTTCGTCTGGAGCGCACCTCTGTTTCCAGGATATTTAGAGGAGCTTTCTCAGCCATGCCAGAGCTGCTTTATTTGTGGCTTACATATAACTCCATCTCCGTCCTACACCCAAGAAGTTTCACAAACCTGTCCTCCCTACATGAGTTACGACTGGACGGGAACCTGCTGTCCACCTTCCCCTGGGAAGGGCTCAGGGATATGCCCCGTCTGCGAACTCTTGGACTGCACAATAACCGCCTGGCACGAATACCACTCCTGGCTGTCCGCTACCTTAGAAATGTGACTTACCTGGATCTCTCGAGCAACAGGCTGAGCACTCTGGCCAATGACCTGACGGCTCTCTGGCTGTTCAGTGACAGCAATCAAACCCAGCGCTCCTTTGTTTTAGGTCTTCAAGACAATCCCTGGGTCTGCGATTGTCGGCTTTCCACCTTGCTTGACATTAGTCGAGGCCCAGAAAGCTCTCTGGTCCTGCTGGACCGCTTCCTGACATGTAGTGAACCTTTGGATCTGGCTGGAGTTCCCTTTCAGAGTGTAGAGCTCAGCCGATGCCGCAGGCCGTATGTGGTGACGTCTGCCACAAAGATCACCGCTCTGCTGGGCAGCACTGTCCTGCTCCGCTGTGAGGCCACAGGACACCCGACGCCAGCACTCATGTGGATCAAATCTGCCAAACGCAACCTTTATAATCAAGATGTGCAAGAGTCTCCTCGTGTGGGGGTCCGATGGTCTGTGGTCAGTCTAAACGGGATCTCCTATAGTGATGCAGGAGAGTATCGGTGCAGAGCGCAAAACATGGCAGGCATTTCAGAGGCCGTCGTCAGTCTGAATGTGGTCGGGGTAATGGCCGAATATACAGACTTCAAAAACTCCGACCAACAGCAAACTACCACAAAATCAGACTCTAAACGGACGAAACCCAAGCAGAAATCTAAAGCGATGATGCCTCGAAATATGACCGGTTCACTTTCTCCTCTAAAGAGAGTCCTGAAAACCCCCAAAGCTGGCAGAGACAAAATGAAAAGGGACAGGACAGCTGTACAGAAGCTGTCCCACAGACACTTTCTGACTGCTTCTGAtgattcactccttcactctcacGCTGACAAACACCTCTTGTATTGA

Function

symbol description
lrit3b Human ortholog(s) of this gene implicated in congenital stationary night blindness 1F. Orthologous to human LRIT3 (leucine rich repeat, Ig-like and transmembrane domains 3).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-130 Human ortholog(s) of this gene implicated in congenital stationary night blindness 1F. Orthologous to human LRIT3 (leucine rich repeat, Ig-like and transmembrane domains 3).

Ensembl:

ensembl_id ENSDARG00000057054

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012605 True 1317 mRNA 0.52 4 12591508 12602920

Neighbor

gene id symbol gene type direction distance location
XLOC_006502 NA coding downstream 4096 12586997 ~ 12587412 (-)
XLOC_006501 enpep coding downstream 10120 12543634 ~ 12581388 (-)
XLOC_006500 si:dkey-20i10.7 coding downstream 96933 12488863 ~ 12494575 (-)
XLOC_006499 lamtor3 coding downstream 105432 12479264 ~ 12486076 (-)
XLOC_006498 commd8 coding downstream 201760 12378074 ~ 12389748 (-)
XLOC_006504 adh8b coding upstream 30303 12633223 ~ 12646752 (-)
XLOC_006505 adh8a coding upstream 51055 12653975 ~ 12660318 (-)
XLOC_006506 fam241a coding upstream 61946 12664866 ~ 12667220 (-)
XLOC_006507 NA coding upstream 145732 12748652 ~ 12756661 (-)
XLOC_006508 nsd2 coding upstream 390931 12993851 ~ 13030851 (-)
XLOC_006471 BX537274.2 misc downstream 2326603 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 11765283 825904 ~ 826225 (-)
XLOC_006497 NA non-coding downstream 473258 12117113 ~ 12118250 (-)
XLOC_006496 CR792443.1 non-coding downstream 485614 12105778 ~ 12105894 (-)
XLOC_006492 CR792443.2 non-coding downstream 616940 11974452 ~ 11974568 (-)
XLOC_006482 CR556710.1 non-coding downstream 1025645 11565736 ~ 11565863 (-)
XLOC_006510 NA non-coding upstream 984376 13587296 ~ 13590570 (-)
XLOC_006511 CR788322.1 non-coding upstream 1041525 13644445 ~ 13644562 (-)
XLOC_006513 CR788322.4 non-coding upstream 1067520 13670440 ~ 13670537 (-)
XLOC_006514 NA non-coding upstream 1134622 13737542 ~ 13740560 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_03789351_03795877 NA coding CI01180000 null 3788671 ~ 3796197 (-)