XLOC_006499 (lamtor3)


Basic Information

Item Value
gene id XLOC_006499
gene name lamtor3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 12479264 ~ 12486076 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012598
AGCTTGTGTATTTTGTCATGTGATGCTCGCACAGAAACGCAAGAGAAGAACTTTTATAAAGCGTTGAGTTCAGTTGATGAGTGTGCTGCAGGCGACGTACATAATCAGTCCAATGAATATGGCAGATAATCTCAGAAGCTATTTGTATAAACAACTACCAAGTGTTGAAGGACTTCATGCAATTGTGGTGACAGATAGAGATGGGGTCCCTGTAATCAAAGTTGCTAATGACAATGCTCCTGAATATGCGCTGCGGCCGGCCTTCTTGTCCACCTTTGCTTTGGCAACCGACCAGGGCAGCAAGCTGGGCTTGTCCAAAAATAAGAGCATCATTTGTTACTACAACACATATCAGATTGTACAGTTCAACCGATTACCCTTAGTGATAAGTTTCATCGCAAGTAGTAACGCTAACACAGGATTGATCTTCAGTCTGGAGAAGGAGCTGGTTCCTCTGATTGAAGAACTTAGGCAGGTGGTGGAAGTGGCTTAGCAGCTGTTCATCTCAGACCACCTGAATGATAAGAGAGCCACTTTCCAATCTGAGGTCCTGGTGCTCGAGTTCATGCAAACACATCTGTACATATGTATTGTTGGCTGGCTGTTGTTGTGGATGCTCCTGATGCTGTATGTATTTTATGAATGTAACCTGCTCATTTTTGTCTCATCCTAATTAATAAATTTGTCTTAAGTGTTcgtttacaaaaaataaagtgtATTTAATGACA
>TCONS_00012599
TGTGATGCTCGCACAGAAACGCAAGAGAAGAACTTTTATAAAGCGTTGAGTTCAGTTGATGAGTGTGCTGCAGGCGACGTACATAATCAGTCCAATGAATATGGCAGATAATCTCAGAAGCTATTTGTATAAACAACTACCAAGTGTTGAAGGACTTCATGCAATTGTGGTGACAGATAGAGATGGGGTCCCTGTAATCAAAGTTGCTAATGACAATGCTCCTGAATATGCGCTGCGGCCGGCCTTCTTGTCCACCTTTGCTTTGGCAACCGACCAGGGCAGCAAGCTGGGCTTGTCCAAAAATAAGAGCATCATTTGTTACTACAACACATATCAGGTGCTTTCTTTGACATAAGACACATTTGATCTGCTAGTTACTCAGAATTTCTTATATTAACGTATGCTGTTTATCATTGGCAGATTGTACAGTTCAACCGATTACCCTTAGTGATAAGTTTCATCGCAAGTAGTAACGCTAACACAGGATTGATCTTCAGTCTGGAGAAGGAGCTGGTTCCTCTGATTGAAGAACTTAGGCAGGTGGTGGAAGTGGCTTAGCAGCTGTTCATCTCAGACCACCTGAATGATAAGAGAGCCACTTTCCAATCTGAGGTCCTGGTGCTCGAGTTCATGCAAACACATCTGTACATATGTATTGTTGGCTGGCTGTTGTTGTGGATGCTCCTGATGCTGTATGTATTTTATGAATGTAACCTGCTCATTTTTGTCTCATCCTAATTAATAAATTTGTCTTAAGTGTTcgtttacaaaaaataaagtgtATTTAAT
>TCONS_00012600
TTCAGTTGATGAGTGTGCTGCAGGCGACGTACATAATCAGTCCAATGAATATGGCAGATAATCTCAGAAGCTATTTGTATAAACAACTACCAAGGTAAAGACATTCTTTTTGGATTTTAGacacattttatttcattcattgcCAGATGTAATGAATgctgaattgtttatttttaatctgtcaTCAGTGTTGAAGGACTTCATGCAATTGTGGTGACAGATAGAGATGGGGTCCCTGTAATCAAAGTTGCTAATGACAATGCTCCTGAATATGCGCTGCGGCCGGCCTTCTTGTCCACCTTTGCTTTGGCAACCGACCAGGGCAGCAAGCTGGGCTTGTCCAAAAATAAGAGCATCATTTGTTACTACAACACATATCAGATTGTACAGTTCAACCGATTACCCTTAGTGATAAGTTTCATCGCAAGTAGTAACGCTAACACAGGATTGATCTTCAGTCTGGAGAAGGAGCTGGTTCCTCTGATTGAAGAACTTAGGCAGGTGGTGGAAGTGGCTTAGCAGCTGTTCATCTCAGA
>TCONS_00012601
TCTGTTGCCTTTTGTGTATTATGACTTTAATAGATGCTTTCTGGGTTTATAACAGTTTCTGGATTAGACATGTCTGCAGTTAAGTGTGCTGCAGGCGACGTACATAATCAGTCCAATGAATATGGCAGATAATCTCAGAAGCTATTTGTATAAACAACTACCAAGTGTTGAAGGACTTCATGCAATTGTGGTGACAGATAGAGATGGGGTCCCTGTAATCAAAGTTGCTAATGACAATGCTCCTGAATATGCGCTGCGGCCGGCCTTCTTGTCCACCTTTGCTTTGGCAACCGACCAGGGCAGCAAGCTGGGCTTGTCCAAAAATAAGAGCATCATTTGTTACTACAACACATATCAGATTGTACAGTTCAACCGATTACCCTTAGTGATAAGTTTCATCGCAAGTAGTAACGCTAACACAGTAACCAGGGTTCTTACGGATGCTGGAAGTCATTGGAAATGCTTCAATTTTAATTAAGTGTTGTGGATTTGggataaatgtatttaattaagtgTAATTATGTTGCTTTCATAATAAGGTGTTACTAAATAGGTAACAATGatttaatctttaaataaaataaagaaa
>TCONS_00012602
TCGCACAGAAACGCAAGAGAAGAACTTTTATAAAGCGTTGAGTTCAGTTGATGAGTGTGCTGCAGGCGACGTACATAATCAGTCCAATGAATATGGCAGATAATCTCAGAAGCTATTTGTATAAACAACTACCAAGTGTTGAAGGACTTCATGCAATTGTGGTGACAGATAGAGATGGGGTCCCTGTAATCAAAGGTGAAAACCAGATctcagatttttacatttttgtgcacacTACTGGTCAAATGTATAAAAACAGTAAGATTTCCTTTacttcatttaattaaaacatgaatgtagcaacaaaaaaaaaaaagtttattcctTTGAATCAAAGTTGTGAGTATTATTACTTTCTTTAGTCTTCAgttgggctgcacgatattagaaaaatcaaGCATTgcgataattttttattttgcgatttgaatacagtttcaccagattacttgaatatctctatttggaaagattttataATATTAgatcgattgggatgattctgcaatGGGAGTGTATCtccataaaatacaataatctaTAAACGTTTTGGGGCCCCTTACACATTTTTcatgtgg

Function

symbol description
lamtor3 Predicted to contribute to guanyl-nucleotide exchange factor activity and molecular adaptor activity. Predicted to be involved in cellular protein localization; cellular response to amino acid stimulus; and positive regulation of TOR signaling. Predicted to act upstream of or within regulation of TOR signaling. Predicted to be located in late endosome membrane. Predicted to be part of Ragulator complex. Orthologous to human LAMTOR3 (late endosomal/lysosomal adaptor, MAPK and MTOR activator 3).

GO:

id name namespace
GO:0034613 cellular protein localization biological_process
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0032006 regulation of TOR signaling biological_process
GO:0032008 positive regulation of TOR signaling biological_process
GO:0005768 endosome cellular_component
GO:0071986 Ragulator complex cellular_component
GO:0016020 membrane cellular_component
GO:0060090 molecular adaptor activity molecular_function
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway
ko04150 mTOR signaling pathway

ZFIN:

id description
ZDB-GENE-050522-345 Predicted to contribute to guanyl-nucleotide exchange factor activity and molecular adaptor activity. Predicted to be involved in cellular protein localization; cellular response to amino acid stimulus; and positive regulation of TOR signaling. Predicted to act upstream of or within regulation of TOR signaling. Predicted to be located in late endosome membrane. Predicted to be part of Ragulator complex. Orthologous to human LAMTOR3 (late endosomal/lysosomal adaptor, MAPK and MTOR activator 3).

Ensembl:

ensembl_id ENSDARG00000057075

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012598 False 728 mRNA 0.42 7 12479264 12486076
TCONS_00012599 False 789 lncRNA 0.41 6 12479268 12486058
TCONS_00012600 False 536 lncRNA 0.42 6 12479482 12486008
TCONS_00012601 False 589 processed_transcript 0.38 7 12481378 12485992
TCONS_00012602 True 578 lncRNA 0.34 4 12484347 12486050

Neighbor

gene id symbol gene type direction distance location
XLOC_006498 commd8 coding downstream 89516 12378074 ~ 12389748 (-)
XLOC_006497 NA coding downstream 361014 12117113 ~ 12118250 (-)
XLOC_006496 CR792443.1 coding downstream 373370 12105778 ~ 12105894 (-)
XLOC_006495 pprc1 coding downstream 457698 12007904 ~ 12021566 (-)
XLOC_006494 oga coding downstream 473257 11988464 ~ 12006007 (-)
XLOC_006500 si:dkey-20i10.7 coding upstream 2787 12488863 ~ 12494575 (-)
XLOC_006501 enpep coding upstream 57558 12543634 ~ 12581388 (-)
XLOC_006502 NA coding upstream 100921 12586997 ~ 12587412 (-)
XLOC_006503 lrit3b coding upstream 105432 12591508 ~ 12602920 (-)
XLOC_006504 adh8b coding upstream 147147 12633223 ~ 12646752 (-)
XLOC_006471 BX537274.2 misc downstream 2214359 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 11653039 825904 ~ 826225 (-)
XLOC_006492 CR792443.2 non-coding downstream 504696 11974452 ~ 11974568 (-)
XLOC_006482 CR556710.1 non-coding downstream 913401 11565736 ~ 11565863 (-)
XLOC_006480 NA non-coding downstream 1033484 11442838 ~ 11445780 (-)
XLOC_006507 NA non-coding upstream 262576 12748652 ~ 12756661 (-)
XLOC_006510 NA non-coding upstream 1101220 13587296 ~ 13590570 (-)
XLOC_006511 CR788322.1 non-coding upstream 1158369 13644445 ~ 13644562 (-)
XLOC_006513 CR788322.4 non-coding upstream 1184364 13670440 ~ 13670537 (-)

Expression


Co-expression Network