XLOC_006495 (pprc1)


Basic Information

Item Value
gene id XLOC_006495
gene name pprc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 12007904 ~ 12021566 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012594
CGCACTTACAGGGGAGGGGCTAAAGCGTTGAATTGCCGGGAACGCAAATAGCACGTGGCTTGTAGCCGGCAGCTGCTGCGCCTGCAGTTGATTCACGTTTCTCCACACAGTTGAGTTGCAAGATGGCGGCGCGGTGGGGAACAGGCGAGGAGGTGTTAAAAGTCTGTAATACTCAACTCTTCTCGAATCTTGACGAGGCAGAGATGCTTCAGGGAAGTTTCACCAGCAACAGTTTGGAGTTTACCGGCTTTAACAATGGAGATGCATTGGAGGCCTTGCATGGCTGCCTGGATCCATCTATTCTGTCCATTTTTGAGGACAGCCCCACTGGAGAAGTAAAAAGTAATCTTGATGAAGAAAGCGAAGCGACGCTGCTCACAGCTCTCACTGAAATACTTGACAATGTTGATGATGAAAACCTCTCCCCTTTTGACACTTTGCCAGATTCTGACCTGTTTTCTGGCCACAAGGGTCAGGAACACTCACCGCTAAGGAAATTATTTACACGGTCTACTCCAGAGTCAGTTATCCACACAAGACAGTTTCCTGGAAAGAGTCTCCCACGAATGCAGAGACTTTCTCAGCAGAACAGTGAAGGAGAAGAGGAGGAAGATGGAGATGCTAGTTTTTCAATCCCATTATCCAATATTGATTTGTTGTCTTTGGATGGATTTGATTGGTGTCTTCCTGTGTCCTTGGAGCAGGACGGAGAGAGCATGCCCGTCTCTCTTGGTGAATTAGTTAAACACATGCACCCTTACTGCATGACACTGTGTGTGGAAGGAGAAGAGGGCCAAGAGCATCTCCTGCCAGAGAGGGGGCTTGTTTTGGAAGTGGTTGATCAAGGAGAGCATGGAGAGCCCATCCTGGCAATCCCTGATCTCAGCATCCCTCTTTCTCAGGCAGACCCCACAGAATGTGAGCAAAGAGTTCCAGGAAATAGCATAGATAAACAGGAACCTAAGCATGATAATCATGCTCAAAAAGTCACGTCCCCTTCTAATGTATCTCCTGTGGAGAAGGAGAAAGAAGTTGGCAAGGTATGTAAAGGAAAAAAGAGGTGCAAATCTGTTGAAACCCCTTTGGTTGAACAAAGAATTTTGAGAAGCTCAAAAGTAAATGAGGAGCCACAGAAGAAACCgcaaaaagaacaaaagaaaaaggTGACTTTTTCTCCATCGCTCACGTCAGCAGAACCTGAGAGACCTAAACTTTACCCTCCAACAAAGGAGCCTGAGCCACGGGATGAGGAAGAGCAAACCATGACATCTAAAGCTGAAACAAAAATCACTAACCTAACAACAGACAACAATTCTCTTGAAAAGCCTGGAGAGGAAGAACTGCCCTCAAAACAAGAAACTCCCAGTGAACAGCCTAGTGATTGTCAGCGCAATGAAACAAAGCCCAAACCTCTCAGCTTACAACAGTACCGTCTCCTCCGCCAGCAGAAAAAACCAGACCCAGTGGACAAAACAGAGGATTACAGCACTAAATGGCCCACGTTGCCTGAGGCTCCCAAAGAACTTCCTCCAATACCCTGCCTGCCAGACCCCAGCCTCAGAGATCCACGTAAAACATCCCATATTCCTGTTAAAAAAGACCCTGTACCTGAAATCATGCCCGCGTGGCACCCAAGAGGGCCTGCTGCTCCCCCAACACCTGAAGCTTTACTCGTCCCACCTGCTTCGCTAATGGGTTCCTCTAGGAAACCTGTGTCTTCTAAATCAACATCTTCTGACTGTTCATCCCAGTCAGTCCACTCTTCACCTCAAAAACAACCTGCTCCCATCGCTGTGCAACAAAACACTATTCATACCGAGACCTCGTCTCTTGAAAGGACAGTATCACAGCCAGTGTCCACTACACCAGGAGGCTCTACCAGCCTCAAAACGCCCAGTCAAGAGGAATGTTTACATAGGAACCCCAATGCTGCTCATGCGGTTGCTCCATCTAAAGTGCCCTTAGAGCCTCAGATGATCACTACGCACGTTCAGAGCTCAACCACTAGCGCTCCTAAACCTTGTGCTGCTGCGCCTGCAAAGAGAGAGACCGAGCAGGTTGTTTTGGCCCCTGTGTGTGAGCAAGCCAAAACCACCCTGCCAACTAATTCTAAAAAGCTGACCTCACGCTCACAGCCTCATGTTGCGCCAATAGCTGCTCAGCCGTTTTTCACAGCTCAGGTTCAGGCCAGAGTTGTTGAATTGGCAGAGCAGATGAGGATGGCTTCTTCTGAGACCCCTAAACCAAAGACTGCTACGGTTGAGCTGATTGAGTCTTTCACCAGTGAAATTGGTATTGAAGCAGCTGATCTTACGAGCCTCTTGGAGCAGTTTGAAGAGTCTCAGCCCAAGGAAGAGACGCGTGTACCGGAGGTCTGTGGTAGAGCAGCCGCTGTAGGAAACTCCAGttttgaGCAGGTGGAAACTAAAGCAGTTGAGAAAACACGCAACCATGACCTGGGAAGCACAGCGGGTCTCACACCTCCAGCCACACCGCCACACCAGATGTGGAAGCCCATTGCACCAGTTTCACTACTAGGAAAAACCAAGAAGTCAGAGGTCCCTAAATCAACAACCAACAAGGCCATTCAGATAGAGGCAAGACCACTGCCTTCAAATAAGCTGCGTTGCAAGCCTCAGACCCTTACCACCACTGGACAGACTCAACCTTTCTCCCTCGACCACGACTACTGCCTCCCTCCTAAAGAGCTCAGTCAAACTGAAGTTGGCAGCCGGTGGAATGTTAAACAACAGCCTAGCATTGTTATCAAGACCGTTGAGCTGCCTTCTAACAAGCCGCTGCAAAAGAATGTCTCCAAGACTTCTTCATCAACTTCTTCAGTTACTGAAGAGACACAGAAGAATCTTAGCCTCAGTCAACCATCTGAAGGTACAAGCTGTACGCTAAACAGCTCTGTTCTGGAGACTCCAGACGCTTCTCCAAACAGGCCTGACTCTGAAAGCTCCTTACTCAATGAAGTGAACCACAAGAAATCTGTAGACTACTCCAAGTGTTCATCCACAAAGTACCAGCAGGACAGAGGGCGTCAAAAACGAAGATACAGAGCCCCGTCCACTAGTAGTTCAGAATCCAGCTCTGAATCCTCCTCCAGATCACGCTCACCACCTAGGAAAAGaTATAGGTCTCGACACTCAAGCAGCAGATCCAGTTCCTCGTCTCGTTCCCGATCTAGCTCCAGGTCATTTTCTCCACCTCGGCGTCGACGGTATTCCTACTCCAGCTCACGTTCTGGATCCTGGAGCTGCAGCCGCTCTCGATCCAGGTCCCGCTCTACTGATTCTCATGAACACCGTCACTGGAGAAGTCGAAGAAGCCCTGATCAGAGGCCTGGATATCATCATGTTCAAAATAGCAGTGAGGATACAAAAAGGCGCAAAGAGAAAGCCATTgagGAGCGACGGGTTGTTTATGTTGGAAGAATTTGTGGAAACATGACTCGTATGGAGCTGAAAGAGCGCTTCCTGTACTTTGGAGACATAGAGGAGTGCACCGTACACTTTAGAGAAAATGGGGACAACTACGGTTTTGTCACATACTACAGCGTAAAGGATGCATTTAATGCTATTGAAAACGGAAGCATTCTGAGGAAGCCAAATGAGCTTCCATTTGACCTGTGCTTTGGAGGGAGGCGGCAGTTTTGCAAGGCCAGCTATGCTGATCTTGATTCAAACCGAGAGTACGATCCAAAGCCTACAAAGGGCAAATTTGATGCACTAGACTTCGACACTTTACTCAAGCAGGCTCAGAAAAATCTGAAAAGGTAACGATTAGTCAAGCCACAGGAGAGAAGACGAATTACCTCGGAGCAAAATGCTGCCCCACACTTCCAGTGTTGCCTctcatttactgttttttttttattttattttattttgtttgttttgcttttctttgtttttgtttctgcaaGTTTACACCTTCTATTGAAGTGAAGATTTGTAAGAAAAAtagaaagtgcaaaaaaaaaaatcatgaaatatAAACTATGGAATggaaaaatagtattttttaaaaggattgaatttatttaaatgtttaatctgaATTGATTGTTGGACACATTTTAAGAGGAATTGAATGGAAACATTATGTTGGGGTATAAAGATTTATAAACAAGTTCGTCAAGGTAAATAAACCCAAGATGAaagaatttatttgtgttgacttTTCTCAGATGTGTTATTCTGTCTGCaatactgtataaaaataaactgagtTTCCCTTGATTTTACAGGAACtgaaaa

Function

symbol description
pprc1 Predicted to enable nuclear receptor coactivator activity. Predicted to be involved in positive regulation of DNA-binding transcription factor activity and positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including alar plate midbrain region; anterior axial hypoblast; brain; immature eye; and mesoderm. Orthologous to human PPRC1 (PPARG related coactivator 1).

GO:

id name namespace
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0051091 positive regulation of DNA-binding transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0030374 nuclear receptor coactivator activity molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-030131-9858 Predicted to enable nuclear receptor coactivator activity. Predicted to be involved in positive regulation of DNA-binding transcription factor activity and positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including alar plate midbrain region; anterior axial hypoblast; brain; immature eye; and mesoderm. Orthologous to human PPRC1 (PPARG related coactivator 1).

Ensembl:

ensembl_id ENSDARG00000090337

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012594 True 4265 mRNA 0.46 14 12007904 12021566

Neighbor

gene id symbol gene type direction distance location
XLOC_006494 oga coding downstream 1897 11988464 ~ 12006007 (-)
XLOC_006493 npm3 coding downstream 21150 11975954 ~ 11986754 (-)
XLOC_006492 CR792443.2 coding downstream 33336 11974452 ~ 11974568 (-)
XLOC_006491 arl3a coding downstream 36743 11963789 ~ 11971161 (-)
XLOC_006490 zmp:0000000662 coding downstream 207623 11767603 ~ 11800281 (-)
XLOC_006496 CR792443.1 coding upstream 84212 12105778 ~ 12105894 (-)
XLOC_006497 NA coding upstream 95547 12117113 ~ 12118250 (-)
XLOC_006498 commd8 coding upstream 356508 12378074 ~ 12389748 (-)
XLOC_006499 lamtor3 coding upstream 457698 12479264 ~ 12486076 (-)
XLOC_006500 si:dkey-20i10.7 coding upstream 467297 12488863 ~ 12494575 (-)
XLOC_006471 BX537274.2 misc downstream 1742999 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 11181679 825904 ~ 826225 (-)
XLOC_006482 CR556710.1 non-coding downstream 442041 11565736 ~ 11565863 (-)
XLOC_006480 NA non-coding downstream 562124 11442838 ~ 11445780 (-)
XLOC_006476 AL928999.1 non-coding downstream 1095302 10912486 ~ 10912602 (-)
XLOC_006472 NA non-coding downstream 1661014 10275286 ~ 10346890 (-)
XLOC_006502 NA non-coding upstream 565431 12586997 ~ 12587412 (-)
XLOC_006507 NA non-coding upstream 727086 12748652 ~ 12756661 (-)
XLOC_006510 NA non-coding upstream 1565730 13587296 ~ 13590570 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_03532881_03543896 NA coding CI01180000 null 3532722 ~ 3543896 (-)
bowfin (Amia calva) AMCG00003204 pprc1,LOC107585240 coding CM030139.1 CM030139.1 14516169 ~ 14531632 (-)