XLOC_006491 (arl3a)


Basic Information

Item Value
gene id XLOC_006491
gene name arl3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 11963789 ~ 11971161 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012586
ACTTAACTCCCCCTAGTAACCAGCGTCGGCGTCTCGAAAGGTACTTGCAGAAAGATGGGTTTATTGTCAATCCTTCGAAAACTAAAAAGTGCCCCAGACCAGGAGGTGCGCATTCTCCTCCTCGGCTTAGACAATGGTGGAAAGACGACACTTCTCAAACAGCTTGCTTCAGAGGATATTAGTCACATCACCCCAACGCAGGGCTTTAATATTAAGAGCGTTCAGTCTCAGGGCTTCAAACTGAATGTCTGGGACATAGGAGGCCAGAGGAAGATAAGGCCATACTGGAGAAACTACTTTGAAAATACTGACATGCTTATTTATGTTATAGACAGCGCAGACAGGAAGAGATTTGAGGAAACGGGACAGGAATTGGCTGAGCTGTTGGATGAGGAGAAACTTAGTGGTGTGCCTGTTTTAATTTTTGCGAATAAGCAAGACCTGCTGACCGCTGCTCCGGCCTCTGAGATCGCTGAGGGACTGAACCTGCACATCATCCGGGACAGAATGTGGCAAATTCAGTCCTGCTCTGCTCTTACAGGAGAGGGAGTCCAGGATGGCATGAGTTGGGTCTGTAAGAATGTAACTGCGAAGAAGAAATAGTGAGCCGCCTTCATACCCCTGCAGAGAATGTGAAAAGCAAACTTTGTGGACTCTGTGGATTCTTTATCAGCTCGTCCAGGTTAAAGGAGGTTAAAGGAGACACTTCTGACCCCTCTGAACTACTTCAGCCACTGCCTCGATGACTCAGCCACCAGCTCTGTCTCAGCACTGGCCCCGTTTCCACCTGGTAGTAAGCATTTTCAGTAATCTGATCTCAAGTGGTCAGCCGAGACATATTAACATGCTCTCAAATGTGTCTCTTGTGACCACTTGTCTTCAGATTTTGTTGAGGCTTTTTACTCGTCAGGCTTCACATCACATTTGCAGGAGTGTTCTATGCTGTGCCTAAATACTGTTGCATGAATAAACCAATGTTACCAACGGAAAggcaaaataattaaatctaTAATTTTGATCATGATA
>TCONS_00012587
aattcagtttgtgtttgtttgtattttgccATTCTATGTTTATTCCAGGGTTTATTGTCAATCCTTCGAAAACTAAAAAGTGCCCCAGACCAGGAGGTGCGCATTCTCCTCCTCGGCTTAGACAATGGTGGAAAGACGACACTTCTCAAACAGCTTGCTTCAGAGGATATTAGTCACATCACCCCAACGCAGGGCTTTAATATTAAGAGCGTTCAGTCTCAGGGCTTCAAACTGAATGTCTGGGACATAGGAGGCCAGAGGAAGATAAGGCCATACTGGAGAAACTACTTTGAAAATACTGACATGCTTATTTATGTTATAGACAGCGCAGACAGGAAGAGATTTGAGGAAACGGGACAGGAATTGGCTGAGCTGTTGGATGAGGAGAAACTTAGTGGTGTGCCTGTTTTAATTTTTGCGAATAAGCAAGACCTGCTGACCGCTGCTCCGGCCTCTGAGATCGCTGAGGGACTGAACCTGCACATCATCCGGGACAGAATGTGGCAAATTCAGTCCTGCTCTGCTCTTACAGGAGAGGGAGTCCAGGATGGCATGAGTTGGGTCTGTAAGAATGTAACTGCGAAGAAGAAATAGTGAGCCGCCTTCATACCCCTGCAGAGAATGTGAAAAGCAAACTTTGTGGACTCTGTGGATTCTTTATCAGCTCGTCCAGGTTAAAGGAGGTTAAAGGAGACACTTCTGACCCCTCTGAACTACTTCAGCCACTGCCTCGATGACTCAGCCACCAGCTCTGTCTCAGCACTGGCCCCGTTTCCACCTGGTAGTAAGCATTTTCAGTAATCTGATCTCAAGTGGTCAGCCGAGACATATTAACATGCTCTCAAATGTGTCTCTTGTGACCACTTGTCTTCAGATTTTGTTGAGGCTTTTTACTCGTCAGGCTTCACATCACATTTGCAGGAGTGTTCTATGCTGTGCCTAAATACTGTTGCATGAATAAACCAATGTTACCAACGGAAAggcaaaataattaaatctaTAATTTTGATCATG
>TCONS_00012588
TAGTAACCAGCGTCGGCGTCTCGAAAGGTACTTGCAGAAAGATGGGTTTATTGTCAATCCTTCGAAAACTAAAAAGTGCCCCAGACCAGGAGGTGCGCATTCTCCTCCTCGGCTTAGACAATGGTGGAAAGACGACACTTCTCAAACAGCTTGCTTCAGAGGATATTAGTCACATCACCCCAACGCAGGGCTTTAATATTAAGAGCGTTCAGTCTCAGGGCTTCAAACTGAATGTCTGGGACATAGGAGGCCAGAGGAAGATAAGGCCATACTGGAGAAACTACTTTGAAAATACTGACATGCTTATTTATGTTATAGACAGCGCAGACAGGAAGAGATTTGAGGAAACGGGACAGGAATTGGCTGAGCTGTTGGATGAGGAGAAACTTAGTGGTGTGCCTGTTTTAATTTTTGCGAATAAGCAAGACCTGCTGACCGCTGCTCCGGCCTCTGAGATCGCTGAGGGACTGAACCTGCACATCATCCGGGACAGAATGTGGCAAATTCAGTCCTGCTCTGCTCTTACAGGAGAGGGAGTCCAGG

Function

symbol description
arl3a Predicted to enable GTP binding activity. Predicted to be involved in cilium assembly. Predicted to be active in cytoplasm and microtubule cytoskeleton. Is expressed in neural tube; otic placode; and pronephric duct. Human ortholog(s) of this gene implicated in Joubert syndrome and retinitis pigmentosa 83. Orthologous to human ARL3 (ADP ribosylation factor like GTPase 3).

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-368 Predicted to enable GTP binding activity. Predicted to be involved in cilium assembly. Predicted to be active in cytoplasm and microtubule cytoskeleton. Is expressed in neural tube; otic placode; and pronephric duct. Human ortholog(s) of this gene implicated in Joubert syndrome and retinitis pigmentosa 83. Orthologous to human ARL3 (ADP ribosylation factor like GTPase 3).

Ensembl:

ensembl_id ENSDARG00000056794

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012586 False 1026 mRNA 0.46 6 11963789 11971161
TCONS_00012587 False 1014 mRNA 0.45 5 11963792 11967769
TCONS_00012588 True 543 mRNA 0.48 5 11966165 11971148

Neighbor

gene id symbol gene type direction distance location
XLOC_006490 zmp:0000000662 coding downstream 163508 11767603 ~ 11800281 (-)
XLOC_006489 ube2d3 coding downstream 200598 11746412 ~ 11763191 (-)
XLOC_006488 manba coding downstream 219816 11714869 ~ 11743973 (-)
XLOC_006487 slc39a8 coding downstream 264259 11690277 ~ 11699530 (-)
XLOC_006486 si:ch211-195e19.1 coding downstream 284303 11674764 ~ 11679486 (-)
XLOC_006492 CR792443.2 coding upstream 3291 11974452 ~ 11974568 (-)
XLOC_006493 npm3 coding upstream 4793 11975954 ~ 11986754 (-)
XLOC_006494 oga coding upstream 17303 11988464 ~ 12006007 (-)
XLOC_006495 pprc1 coding upstream 36743 12007904 ~ 12021566 (-)
XLOC_006496 CR792443.1 coding upstream 134617 12105778 ~ 12105894 (-)
XLOC_006471 BX537274.2 misc downstream 1698884 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 11137564 825904 ~ 826225 (-)
XLOC_006482 CR556710.1 non-coding downstream 397926 11565736 ~ 11565863 (-)
XLOC_006480 NA non-coding downstream 518009 11442838 ~ 11445780 (-)
XLOC_006476 AL928999.1 non-coding downstream 1051187 10912486 ~ 10912602 (-)
XLOC_006472 NA non-coding downstream 1616899 10275286 ~ 10346890 (-)
XLOC_006469 NA non-coding downstream 1710755 10250174 ~ 10253034 (-)
XLOC_006497 NA non-coding upstream 145952 12117113 ~ 12118250 (-)
XLOC_006502 NA non-coding upstream 615836 12586997 ~ 12587412 (-)
XLOC_006507 NA non-coding upstream 777491 12748652 ~ 12756661 (-)

Expression


Co-expression Network