XLOC_006486 (si:ch211-195e19.1)


Basic Information

Item Value
gene id XLOC_006486
gene name si:ch211-195e19.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 11674764 ~ 11679486 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012578
TGTCGACAGCGAGCTCTTAAGCTGTGATCGAAGGAAACGAAGAACTGAACAACAAAGCATTAATGTTGTTAGTTTGATCATTTACAGTGGGGGACGTCTGCTACTACTTACTGctactattattatatatttatttatttggttactCTAGATTTTAAACATCTGAAAAAAGCCTGTTTTCAATTGGCCTGATTTTGATTATCACCGTTGTTACTTTGTGCAGACACCGTCTCCCCGAAGCTCTTCAGGAACACTTCCGTAAACTCGCGAATGCTTGGTATATATGCTCGCTGGGCATCGAGTAAAGGTCAATAACCTGGAAATCTCGTCTTATCTGGATCGAGGCGATCGGGGGAGTTTGCTGTCATGGATGAGGTGCAGATTCGTCAGTACAGAGAGGAGGATCTTGAAGAAGTGAAGGAGGTTTTCACTATCGGTATGAGTGAACACATCCCGTCATCCTGCATGCACGTCCTCAAGCAGCCCCTGGCACAGATGTTTCTGGGATGTGTGTTTTGCGCTTTGCTGACCAGCTCAATGTCCATCCTTTTACCCGTTCTCGCAGTCACGCTGCTTTTGGCCGCAGGCAGGCAAAGCGTGTGTTACATGTTCAACAAGTACATCCAGACATCCCTTGAACAAGATCTAAGCCACATTCAGCAGACCTACATGGATCCACCGAATGCCTGCGTCTGGGTTGCCGAAAGCCAAGGTCGTGTCGTGGGCACAGTTGGCTGCTTTCCTTCAGAGAATGACAAGAACTTCTTGGAACTGAAGAGAATGTCTGTTAAAAAGGCTCATCGTGGAAAAGGCATTGCCAAAGCGCTGTGCCGCACCGTGGCTGATTTTGCTCGTGAACGTGGTTATTTAGGAGTAATCCTGCACACTTCAGTGGTCCAGACAGATGCACAGAAGCTCTATGAGCACATGGGCTACCACAAggtcagagaatttagtgctccAGAGTTTATTGCCAAGCTGACTAATTTCACACTAATGGAGTATCAGCTCATCGTAAAACGTCACAACTGAGGATGACGCCTCTGCAGTTTTGTTCCTGATTAAAAGGGCTTTTTAACGCTGGTTCAAATCACTAATGAAGCAAACCGCTATCTTCAATTGTctgtttctttctaaaaaatCCACTTTGGAAAAAGGGAGGTGTTCTTTTATAAGAAGTTATTTATAAAGGGGGGCGGGTGAATCAGTTGTCTTATGCAAttttttatgtagttttaaaGCAGAACTTTTTTGTTTATGATTTAAAGCATTAGTTTAAccaaattctgttattatttgcTTATCTTGTTCCACACCTTCAGCACTTTTTTTCACCTTCAGAAAACAAATCAGTTTTTTAATGAATcagttttattaactttttaatcAGTTCCTACATTTTAATCCAAAACATTGAATGTTCAAAGAGAAGTCAAGGTCAAGGTAAAATGTATTGTCTCCCGTAGgagaaatttgttttagaaaaaaggTTCTGCTGTACATCGACACTAACAagaaaacatgtaacatacatacacattaaaatctaatcctaaaatacctcctaatataaatatgattccataaaatcagtaattttaataaattttttataaaaaaataaaaaatgattaaagtaCCATATGCCCCACTGCCCTCTGTTGTGCAAACCAATCCTGTTATCTTAGTCTTTGACCATCCTTCCTTGCTTGCTCGTTGATCAACTTAattgaaaaggaacaaaagaatgTTTATATCTATTATGCTTGCACAGCGGGACCCTATATCTTCTGCCAGAATTCATCAGCTCATATTCCACAGACAGCACATGTGAAGAATCAGATAAAATCTTGTTGGCTTGTTGGATTGTGCACAACTCAAAGATGTCTTTTAGTGAACCAAGTGTCTTAATTCCCGTGATTTTTCCTGCCACTCTCATCAGGTTATTTACTTgggttttcatttttactgtcagATTCCCAAACCAAACAATAATCCCATATCTTAAAATAGACTCTATTGTTGCTTTATAAAAAGTCATCATTATGCTGCTACTCACTCCAAATAATCTTAGTCTGCGTAAAAAGTGTAATTGCTGATAAATTCTTGCACAAAGACTTGACACCTGAGAGTGCCAATTAAGTTCACTATCAATGTTCACTcctaaatatttatatgaatcaATCTAAAGGGCAGGTTTTATTCACATATGAACAGCGATCAGAAATCATAATCAGAAGCCCCACCATATTGACATGAGACGATAAccgttttggaaaagtcaaggttttaaaaccggcaaaattttcttaggacaacagtatctccagctgaaaagatctccaaagatggcGTTTTAGATGAAAGAAATCTGTGTGTTTGATTCATTTGATTCAATaactaattttaattatttagcctgacatgtttactcctCTAAAGTATTTcttaaaatattgtgtttaaagggggaaaaaagcGTAATTTTTTcctcagacatttaaaagaatatattttcgagcagtaatcacagtaccgTGAAACAACCGCGAATATTggtatccaaggttatcacacctTCAGAATCTTTTATCAGCCCCATGCCTACTACCATATATTAATGACATGCGAGACAAACAAACCTCAATGGTTCATGAAGCTCAAATGTGACATAAAAGAATGAATCGAATTTGTTCTCGTGTCAAAGATCAAATCTGAAGGCTGTAAACATTGTTTGCTGATAACTGTTTTATGCAAAACTCTTTAGAATATCATTCATTTATAAGTTTGCAAATGTTTTGATGCATTGCATTTTGAGTAAGTAGACTTTGAGGGAATGTAAAGAAATCACATAGAATTGGTTACAAATGTATGTATCCGTGTTCTGAAGTTGAATTAAAGTCTAATAAGTCTGAAATGACAAGTGAAGATGGAgcctttaaagtgatagttcacccaaaatgaaaatgacctcaccatttactctccctctttcctctgttgaacaaaataaaagaatattcTGATGTTTTTTGATACGGAAGATATTTAGATGTTGGGAAATGCTGGTTGTTTGGACCAATCGACATTCTTTGTGGAAAAAAAAGCACTATAAAAGTTAATGggtaaccagcattcttcaaaatgtttattcttttctGTTAATATGGACCCTTTCCACACTTCCTTTTCATCATAGCTTGGTAAatttagagcgcagtgaatgggagtgtacaacattttttttttacaatcttatttgctaaaataataaaagaaaacgaCCACGATGGTGTAATCAAGACTTTTAGAAAATAAggaaatagtgtgagactgatgacggcagacAGAGGAGAgaacaacatcaaatttactctAAGCCTCATAGACGCTGTgttagaaacacctcacataagcggtcatttgttttttaagttgACGCAAATATGatgtaatacatacataaatgcatatcaatgtttatacgtttaaaaaaaaatctaaatattaaaaactttcaaggatttaggaTGTTAAACTTATCATAACAGTCTTTTAAAAAGGATCCATGGGTTTTGATCAAGGGAAAGGTGACTAAATAATAACAGATTTCACTTTTTGGGTTAAACTCTCCCTTTACAGAATCAAAACGATGCATTTCTGATCATTTCACCACAGAGTATTTAACAAGCATTTGAGGGATGTGTTCTTGGAGAAAATGCCATAGAGTTTGTAGACCTTGATGTGTTGTTGAAGAtcttttttgtttatgtatatttAGAAGTTTCTTGGACTGCGAAAAACAGCAGTTCCCTGTAAACAAAGTATTTGCATTTGGTCCGTAATGCAAATGAGATACCCCGAAACCGTCCGATGGTTTTAACAGGAATTGCTTGCAATGTGAAGGACGTTACATTTCCACCTCTCTTAGTATTGATGTTGATTATAATGGCAGCAAGAGTGTGAAAATTATTATCAGTTTATGCTGGTTAACAAAAGAACTgaatcatctgagctttttttctgttgtttttaattgATGACATAATGAAATGTGATTGTCCTGTGGCTGACTGATTTCAGTGTAAAACATTCAACGTAACATCCACTCaatatgaagatttttttttgtaatttgttgtaagaaatcaataaaatcttttataaatgtg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000078991

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012578 True 4172 mRNA 0.36 2 11674764 11679486

Neighbor

gene id symbol gene type direction distance location
XLOC_006485 CR559945.2 coding downstream 3074 11670967 ~ 11671690 (-)
XLOC_006484 dctn1b coding downstream 7103 11581942 ~ 11667661 (-)
XLOC_006483 si:ch211-132e22.4 coding downstream 96460 11577407 ~ 11578304 (-)
XLOC_006482 CR556710.1 coding downstream 108901 11565736 ~ 11565863 (-)
XLOC_006481 adss2 coding downstream 137813 11489953 ~ 11536951 (-)
XLOC_006487 slc39a8 coding upstream 10791 11690277 ~ 11699530 (-)
XLOC_006488 manba coding upstream 35383 11714869 ~ 11743973 (-)
XLOC_006489 ube2d3 coding upstream 66926 11746412 ~ 11763191 (-)
XLOC_006490 zmp:0000000662 coding upstream 88117 11767603 ~ 11800281 (-)
XLOC_006491 arl3a coding upstream 284303 11963789 ~ 11971161 (-)
XLOC_006471 BX537274.2 misc downstream 1409859 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 10848539 825904 ~ 826225 (-)
XLOC_006480 NA non-coding downstream 228984 11442838 ~ 11445780 (-)
XLOC_006476 AL928999.1 non-coding downstream 762162 10912486 ~ 10912602 (-)
XLOC_006472 NA non-coding downstream 1327874 10275286 ~ 10346890 (-)
XLOC_006469 NA non-coding downstream 1421730 10250174 ~ 10253034 (-)
XLOC_006492 CR792443.2 non-coding upstream 294966 11974452 ~ 11974568 (-)
XLOC_006496 CR792443.1 non-coding upstream 426292 12105778 ~ 12105894 (-)
XLOC_006497 NA non-coding upstream 437627 12117113 ~ 12118250 (-)
XLOC_006502 NA non-coding upstream 907511 12586997 ~ 12587412 (-)
XLOC_006507 NA non-coding upstream 1069166 12748652 ~ 12756661 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_09062947_09063618 NA coding CI01180000 null 9062947 ~ 9064386 (+)