XLOC_006481 (adss2)


Basic Information

Item Value
gene id XLOC_006481
gene name adss2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 11489953 ~ 11536951 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012572
gtgtttgggagtgagagtgtgtgtatgtcgGAAGAGCATTGCGGAGCTGCAGGAGGATTATAGGCGAGCCGGTCATGTCAGACAGCGGGGACGCACAGCCGCAGGACGGAGGCAACAGCAGCTCGAGCCGCGGGAAGAGCCCCAGTGTGGGCAACAGAGTGACCGTGGTGCTCGGAGCGCAGTGGGGCGATGAAGGCAAAGGGAAGGTGGTGGACCTGCTGGCTCAGGACGCTGACATGGTCTGCAGATGTCAGGGAGGCAACAACGCAGGACACACCGTCGTGGTTGATTCAGTTGAATATGATTTCCACCTTCTACCCAGTGGGATTATCAACCCTAAGGTCACTGCTTTTATTGGTAATGGTGTAGTCATTCACCTGCCGGGACTCTTCGAGGAGGCTGAGAAGAATGTGCGGAAAGGAAAAGGTCTTGAAGGCTGGGAGAGCCGACTCATCATCTCTGATCGAGCACACATCGTGTTTGATTTCCATCAAGCTGTGGATGGAGTCCAGGAACAGGAGAGGCAACAGCAAGCTGGCAAAAATTTAGGAACCACTAAAAAGGGAATCGGCCCTGTGTATTCAGCTAAAGCAGCTCGCAGCGGCCTGAGGATCTGTGACCTGCTGGCTGACTTTCAGGAGTTTTCTGAGAGATTTAAACATTTGGCTTCGCAGTATAAGTCCATGTACCCTTCACTGGAGATTGATGTGGACGGAGAACTGGAGAAACTGAAGTCATATGTAGACAGGATAAAGCCTATGGTGAGAGATGGAGTCTTCTTCATGTACGAGGCACTGCACGGAGATCCTAAAAGGATCTTGGTAGAAGGTGCCAACGCTGCCTTGCTGGACATTGACTTTGGGACCTATCCTTTCGTAACATCCTCGAACTGCACTGTTGGAGGGGTGTGCACGGGTTTGGGGATGCCTCCACAGAACGTTGGTGAAGTCTACGGAGTTGTCAAAGCTTACACCACCAGAGTTGGGATTGGAGCTTTCCCTACGGAACAGAGCAATGAAACTGGTGAGCTCTTGCAGACGAGAGGAAAGGAAGTGGGCGTCACCACAGGTCGTAAGAGGAGATGCGGTTGGCTGGACTTGGTGCTCATCAAATACGCCCACATGATTAATGGCTTCACAGCCTTAGCTCTTACCAAACTTGACATCTTAGACGTGCTTCCTGAGATTAAAGTTGGTGTGGCCTACAAAGTAAATGGAGAGACCATCCCACATTTCCCAGCTAACCAAGAGGTGCTACAGAAGGTTGAAGTGGAGTATGAGACTCTGCCGGGCTGGAGTACAGACACTTCTGCTGTCAGGACCTTTGAAGAGCTTCCAGAAAATGCTAAGAAATACGTCTGCTTCATTGAGGATCGCTTGGGTGTGCCTGTGAAGTGGATTGGTGTTGGGAAGTCACGGGAATCAATGATCCAGCTCTTTTAAGAGGCGGCTGGGCCTGTGTGTAGCACTGACTGGATTACGCTCTGGACTCTGGTCTTGGAGATGAGAAGTTTCCTCATACGTTTTCTCTCCCACATCACTTCTGTTTCTCCACCGCCAGAAGATTAGGACCTCAGGTGTCCCTCAGATCATCTTGAAACCCAGTGAAATGGAGCATTTGCCACTTTTAACGGCATTCCTGTGGTACAGTAAATCAAAAAGGGCCTTCAACTAGTCACTTTTTGCCATCGTTTAACAGTCTTTCATCTGTGCTTCGACTTTAATGTTTCTCCTCTGGTATATCGAGCTCATTGTCTCCATCTCAAGTCCATCTGCTGTACACGTGCTGCTACTTCAAACAGTCAGGCATCAGTAGTGGTTTATATTATTGTTAGATATTCATTTTTCACACCGGTTGGGTAAAACGAGTACTTATACATGTTATATTTAATGTCTTATGTTGCTTTTATCACACAAAAATCTGCGTGTTCTACCACTCTTTGTCTTTGTTTTAAATAGATTGTATGATTGACACTTTACTGAAgcatacactgttaacaatttttgcCAGTTACACAGTTTTTAACTGTAATGTGAATTGAATTTTACTGTatgacagttatgcagtatgttaccctattttaaagttgcattgtgggGAATGTTCTCTTCGCGccattaaaacagtgtttttatttgctgtgaatcaaaatacagtaaaaatgaatTTGCTTTAAACCCAAAAAAA

Function

symbol description
adss2 Predicted to enable adenylosuccinate synthase activity. Predicted to be involved in 'de novo' AMP biosynthetic process and IMP metabolic process. Predicted to act upstream of or within AMP biosynthetic process. Predicted to be located in mitochondrion. Predicted to be active in cytoplasm. Orthologous to human ADSS2 (adenylosuccinate synthase 2).

GO:

id name namespace
GO:0046040 IMP metabolic process biological_process
GO:0044208 'de novo' AMP biosynthetic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006167 AMP biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005525 GTP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004019 adenylosuccinate synthase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016874 ligase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-337 Predicted to enable adenylosuccinate synthase activity. Predicted to be involved in 'de novo' AMP biosynthetic process and IMP metabolic process. Predicted to act upstream of or within AMP biosynthetic process. Predicted to be located in mitochondrion. Predicted to be active in cytoplasm. Orthologous to human ADSS2 (adenylosuccinate synthase 2).

Ensembl:

ensembl_id ENSDARG00000002071

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012572 True 2187 mRNA 0.47 13 11489953 11536951

Neighbor

gene id symbol gene type direction distance location
XLOC_006480 NA coding downstream 44173 11442838 ~ 11445780 (-)
XLOC_006479 akt3a coding downstream 111561 11175208 ~ 11378392 (-)
XLOC_006478 cep170aa coding downstream 416989 10980755 ~ 11072964 (-)
XLOC_006477 abcg8 coding downstream 544559 10926528 ~ 10945394 (-)
XLOC_006476 AL928999.1 coding downstream 577351 10912486 ~ 10912602 (-)
XLOC_006482 CR556710.1 coding upstream 28785 11565736 ~ 11565863 (-)
XLOC_006483 si:ch211-132e22.4 coding upstream 40456 11577407 ~ 11578304 (-)
XLOC_006484 dctn1b coding upstream 44991 11581942 ~ 11667661 (-)
XLOC_006485 CR559945.2 coding upstream 134016 11670967 ~ 11671690 (-)
XLOC_006486 si:ch211-195e19.1 coding upstream 137813 11674764 ~ 11679486 (-)
XLOC_006471 BX537274.2 misc downstream 1225048 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 10663728 825904 ~ 826225 (-)
XLOC_006472 NA non-coding downstream 1143063 10275286 ~ 10346890 (-)
XLOC_006469 NA non-coding downstream 1236919 10250174 ~ 10253034 (-)
XLOC_006468 NA non-coding downstream 1257875 10150919 ~ 10232078 (-)
XLOC_006492 CR792443.2 non-coding upstream 437501 11974452 ~ 11974568 (-)
XLOC_006496 CR792443.1 non-coding upstream 568827 12105778 ~ 12105894 (-)
XLOC_006497 NA non-coding upstream 580162 12117113 ~ 12118250 (-)
XLOC_006502 NA non-coding upstream 1050046 12586997 ~ 12587412 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_09119278_09132888 ADSS coding CI01180000 null 9118723 ~ 9134060 (+)