XLOC_006510


Basic Information

Item Value
gene id XLOC_006510
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 13587296 ~ 13590570 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013765
ACTTTAAAGACTGTAGGTGCATTAAAATCACATTTGACATTAGCACATTAACAGTCTGCTGCAGTTACTgactatttgatttttttaacctCCTGTATAGCTGATGTCCGAAAACAGTGGCCTGCATGTTTTTGGGAGTTTAGGCAAGTTTGCATTTgagattatttatttcaaaatgtataaccCTTGTTCACAATTCAtactattcatttttttatggtCTGTTTGTAGGTCTATGCTGAGTTTTACAGGATTACTCAAACCAACCTCAAAGATACCTTCTCTTTTTCGGATGAATACGCTATCAAGTTTTATGGATCATGTGGTGGGCGATATGGAGAGATAATAAGGACCGCCCTGGACCAACTGGACAATCAAGTAATTATTTAGCATTCAATCATATCACTGATTAAAGGGGGGCATATTAAACTTTATGGAGTTTACCATGGAGTTTCTCTTTTTGTGTGCAATATTGGAATTCATGCAGGTAATTAATCTTTGAAGTTACAAAACAGTTTGTTCCCTAAAAGAAAAGTTTGTAGCACTGTTTTCACCTCTGTAAAGGATGCTACATTTTCATCACTTAGTCTTTAGTAGAACAACCATGACTGAGTCCGGCTGACCAGGGAGTGAAAACAGGTGCtgcaacaataattataaagcaaatttcatttttaataattaaaacatgttgGGAATTTCTGATCAAAATGACTAACCTGTGAATAACCATAATTAATGCCCTTCAATTGTAAAGTGGTGCCATCTGGTTTAATGTGACAATAGCTGATGacctatggcaagcctttttaagTTTTATTCTATAGcccgtactagtatctattttcttgttactagtacttatattttagatactagtatcttttccattaagtactagtacttatttattagttactagtacttctttattagatactagtacttatttattagatactagtacttatttgttagttactagtacttattaaatagttgctagtacttatttattagatactagtacttattaaatagatactagttcttatttattagttactagtacttatttattagttactagtacttatttattagatactagtacttatttattagatactagtacttatttattagttactagtacttatttattagttactagtacttatttattagttgctagtacttatttattagatactagtacttattaaatagacactagttcttatttattagtaactagtacttattaattagatactagtacttatttattagttgctagtacttatttattagatactagtacttatttattagttgctagtacttatttattagatactagtacttattaaatagatactagttcttatttattagttactagtacttattttaatagtgactagtaactattctgttgttactcgtaatgaattaaaaattttccCATTCATTTCTATGGGATCTCTAATTGAGATATcaactattcagttttgactagtatgtaTTCCAGCTGTGACTAGTGCATATTTTTATCTACTAGTAGTTAATCATTAGGTACTAGTACCTATTACTGAGATGCTACTACCTaattaatagatactagtacttatgtattagatactagtccttattcattaggtactagtatctaattaatagatactagtacttatttattagatactagtacttattaaatagcttactaatgtttattcatgtagagttgatgcttaacggataatcaattcactatttgctaatgcttaataaatgattcatttttataaaagtgttacctgaaatgttttataaatagaaGGTATTTAAATGACTGTGTTACTGACATTACTACCTTCAGTTTCCAAATTAAGTtgctttgcctttgctttttttaCCTTGCTTTTTGGAGATGTTTGtgattttgcagtaaaaattgtTTTTCAtcctctttttatgtttttttttactgcaggaCACAGAGCCAGATGATATTTGCACAATAGAGATGGAGATGGACATCCTTAGCACTGTTGAAGATGATGTTGCCACTCTTCAGACCAACCTAAATGTAAGGTGCCTGTCTGTGGTTCTGGAAGAGCAAATCGTGCTGAAAAAGATCTTCCGACAGCTGTTGTTCTCCTCTTTGGTTTGATTAATTTCCTCATTATGAACTACCCCAAAGAACTGAAACACATCTTTGAAACTATTCAGAAAGTGTTTATTGGCCTTGATCCTCAGTGCTCAGCAAGAGTCCagtatttcaaaaacaaaatgcatttgtttgtaCACTGAAATTGTGTTACTCTTGGTGTTGTCACGAAActtaaattcagttttgattttacattttcaaattttaaaaacatccatttcccaccAATTGATAGATTGGCTGTTGTGTTCAAGAgctcaacataaatgactgtgattggctgagaagtTCACCATTTCACTGCTCTTCACTGATGTTCATggagtgcaaacacacacacacacacacaaac
>TCONS_00012615
GCACGAGGTGTCCTCTCACCAGCAGCAGCTGCCATCTCCTGATTCAGgaCACAGAGCCAGATGATATTTGCACAATAGAGATGGAGATGGACATCCTTAGCACTGTTGAAGATGATGTTGCCACTCTTCAGACCAACCTAAATGTAAGGTGCCTGTCTGTGGTTCTGGAAGAGCAAATCGTGCTGAAAAAGATCTTCCGACAGCTGTTGTTCTCCTCTTTGGTTTGATTAATTTCCTCATTATGAACTACCCCAAAGAACTGAAACACATCTTTGAAACTATTCAGAAAGTGTTTATTGGCCTTGATCCTCAGTGCTCAGCAAGAGTCCagtatttcaaaaacaaaatgcatttgtttgtaCACTGAAATTGTGTTACTCTTGGTGTTGTCACGAAActtaaattcagttttgattttacattttcaaattttaaaaacatccatttcccaccAATTGATAGATTGGCTGTTGTGTTCAAGAgctcaacataaatgactgtgattggctgagaagtTCACCATTTCACTGCTCTTCACTGATGTTCATggagtgcaaacacacacacacacacacaaac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000092850

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013765 False 2531 lncRNA 0.31 1 13587296 13589826
TCONS_00012615 True 579 processed_transcript 0.40 2 13587296 13590570

Neighbor

gene id symbol gene type direction distance location
XLOC_006509 fgfr3 coding downstream 292424 13213567 ~ 13294872 (-)
XLOC_006508 nsd2 coding downstream 556445 12993851 ~ 13030851 (-)
XLOC_006507 NA coding downstream 830635 12748652 ~ 12756661 (-)
XLOC_006506 fam241a coding downstream 920076 12664866 ~ 12667220 (-)
XLOC_006505 adh8a coding downstream 926978 12653975 ~ 12660318 (-)
XLOC_006511 CR788322.1 coding upstream 53875 13644445 ~ 13644562 (-)
XLOC_006512 pimr47 coding upstream 69994 13660564 ~ 13662624 (-)
XLOC_006513 CR788322.4 coding upstream 79870 13670440 ~ 13670537 (-)
XLOC_006514 NA coding upstream 146972 13737542 ~ 13740560 (-)
XLOC_006515 ky coding upstream 152632 13743202 ~ 13754091 (-)
XLOC_006471 BX537274.2 misc downstream 3322391 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 12761071 825904 ~ 826225 (-)
XLOC_006502 NA non-coding downstream 999884 12586997 ~ 12587412 (-)
XLOC_006497 NA non-coding downstream 1469046 12117113 ~ 12118250 (-)
XLOC_006496 CR792443.1 non-coding downstream 1481402 12105778 ~ 12105894 (-)
XLOC_006492 CR792443.2 non-coding downstream 1612728 11974452 ~ 11974568 (-)
XLOC_006516 NA non-coding upstream 422615 14013185 ~ 14015180 (-)
XLOC_006518 AL928929.1 non-coding upstream 793851 14384421 ~ 14384538 (-)

Expression


Co-expression Network