XLOC_006516


Basic Information

Item Value
gene id XLOC_006516
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 14013185 ~ 14015180 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013767
GGAGAAAACTATTCACAGATGGCAATGTTGGAGATCTGATAGCCTTAGTCAAACAGGTCTCAACTATCTTTTGATTGAATATTGAAATTTGACAGATTTTCAAGTTCATTGACACTGATGTAAATGCAGGAGTAAAGGAGCTTGGCAAAtttcaaatatattatattgCAAGCAACACCCCGGACTCATTAGAAAGAAGTGTGCACTCATTACAGGTAAAACATTACTATATTTCTCCCTTTATATTACTATAGATAAacgtaaacatttaaataaataaaatgttttggcaTTTCTTAGTGTCCTTTAACAGATTCAACTCAGACTGGCAACACAACTAGTTTGCTGACGCTGCTTGAAGAAAAGCCTCTTCAATCCTGAGAGAACATGAAGACTGTCAAAAAGTTGCTGTCAGTGTCCTTGTAGAGAAACATGGATTGTGAGTATGTGGTTTGTTTATTTCATGTAAGATGTATTTatttgcaaattaaataaattacatttatttaaataagttatataataaaataaattctacatttaaaaaatatttcaaataaatacatttaacaatttaTCCCAATCAATTCTGAAGTACCACTGTTTAGTCAATTTTTTGTTTGTCAATGTTTGTGTATAAGCAATTTATgcaactgtatttgttttttacttttttagctATCCTTCTGGTATAGAAAAGCTGGTACTAGCAAAAGAGATTCTGTCATTGTTCCCCTTAGGTGCCCTTTGGTGAAAATGAGGGACATGAGAATGTAAGaatgtttttacattataaacTGAATTTATTAGGAATGTGTATATAAGTTGCTCATTTATTTGACTTTCATTagttctgtttttacattactaatgtcaggaggattttttttattttgctaggCCATCACACAGTCGGACGGAAGCTTCAACAGAGCCAGTGGGTGTACAGTTTAAAACATCATCATTGTACACCGCAACCTTCTTCACCAAGTCCAGATGAAACCGTACCAAGTGAGTTGTTGTCTCTGATAAAGAAGATGCGACCAGACAACTTATCATCAATAAAGACTGCAATCAATCAAACCTTCAGTTACAGAAGAAGATGGATAACAACAAAATCCCTTCAAAATCTCTTGCTGAAATCTTCAAGGACTATCCCAGATTTCTTGACATGCCAGCtttggtaatagacatgctcaaCTAAGACAGAACTTTACACAGACATTTATGtcataattgtaatattaatatttctttgtttctgatttctttctttctttaaagaTGGACATTGAATTTTCCAAGCTCACAGATAGGAACGAAGACTTGTTTATCCAGAAAAGGGAAGGGACGATAATTCCAGAACTCAAAGAAATAGCATCTTGGAGAAGAATATTGACATCAGACTCTTACTGAAGATGGCTGACAATCAGCATGATGGTATGAGTTTCAGCCAAAATATCTGTTGCATGTGCACACTTttctaaaaatagtttaaaagatAAAACTTAATGTGAATATTAATATTCTATTAAAGATATTAATttctaatatattttgtttaaattcttATTTTGCATGTGACCTGTATCTTCACTTCAAGATGAGCTGTTAAACTGTTAAAGATCCTTATTCATCTTCTTCCACCCACTGCCTCTGGGAGAAGTGTTGCTGGGAGTAAATGCTGTGTGACTTCTGCTGTGTCCTACCTGTTGGAGCAAGTGCCGGTATAGTTTTTATTGGTTTAGcttatgataaataaaatgtttctaatgcagcaacaTTTTCTTATGCTTTTTATTGTTTCATTCCTGAAGGCTGGTACCACCGTTACATCTTTGCTCACTGAATCCATGAAAGGGACCCTGAAGTCAGCTCAGCCGCAGTTGGTTTCTATTGGTTGTCTAGGACATGGATCCTTGTACGTGTACGTGTACTTGTAGCTGTGGCAAAGAATGACTCTTTTGCTCTTCCACTCGATCCTGAAAGCCTGACC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013767 True 1996 lncRNA 0.34 1 14013185 14015180

Neighbor

gene id symbol gene type direction distance location
XLOC_006515 ky coding downstream 259094 13743202 ~ 13754091 (-)
XLOC_006514 NA coding downstream 272625 13737542 ~ 13740560 (-)
XLOC_006513 CR788322.4 coding downstream 342648 13670440 ~ 13670537 (-)
XLOC_006512 pimr47 coding downstream 350561 13660564 ~ 13662624 (-)
XLOC_006511 CR788322.1 coding downstream 368623 13644445 ~ 13644562 (-)
XLOC_006517 gfra4a coding upstream 176113 14191293 ~ 14487524 (-)
XLOC_006518 AL928929.1 coding upstream 369241 14384421 ~ 14384538 (-)
XLOC_006519 NA coding upstream 517540 14532720 ~ 14533254 (-)
XLOC_006520 ap5s1 coding upstream 887138 14902318 ~ 14908999 (-)
XLOC_006521 cdc25b coding upstream 900164 14915344 ~ 14929236 (-)
XLOC_006471 BX537274.2 misc downstream 3748280 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 13186960 825904 ~ 826225 (-)
XLOC_006510 NA non-coding downstream 422615 13587296 ~ 13590570 (-)
XLOC_006507 NA non-coding downstream 1256524 12748652 ~ 12756661 (-)
XLOC_006522 NA non-coding upstream 935615 14950795 ~ 14981580 (-)
XLOC_006525 NA non-coding upstream 1441496 15456676 ~ 15457624 (-)
XLOC_006526 BX511166.1 non-coding upstream 1559957 15575137 ~ 15580152 (-)

Expression


Co-expression Network