RNA id: TCONS_00013767


Basic Information

Item Value
RNA id TCONS_00013767
length 1996
lncRNA type intronic
GC content 0.34
exon number 1
gene id XLOC_006516
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 14013185 ~ 14015180 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGAAAACTATTCACAGATGGCAATGTTGGAGATCTGATAGCCTTAGTCAAACAGGTCTCAACTATCTTTTGATTGAATATTGAAATTTGACAGATTTTCAAGTTCATTGACACTGATGTAAATGCAGGAGTAAAGGAGCTTGGCAAAtttcaaatatattatattgCAAGCAACACCCCGGACTCATTAGAAAGAAGTGTGCACTCATTACAGGTAAAACATTACTATATTTCTCCCTTTATATTACTATAGATAAacgtaaacatttaaataaataaaatgttttggcaTTTCTTAGTGTCCTTTAACAGATTCAACTCAGACTGGCAACACAACTAGTTTGCTGACGCTGCTTGAAGAAAAGCCTCTTCAATCCTGAGAGAACATGAAGACTGTCAAAAAGTTGCTGTCAGTGTCCTTGTAGAGAAACATGGATTGTGAGTATGTGGTTTGTTTATTTCATGTAAGATGTATTTatttgcaaattaaataaattacatttatttaaataagttatataataaaataaattctacatttaaaaaatatttcaaataaatacatttaacaatttaTCCCAATCAATTCTGAAGTACCACTGTTTAGTCAATTTTTTGTTTGTCAATGTTTGTGTATAAGCAATTTATgcaactgtatttgttttttacttttttagctATCCTTCTGGTATAGAAAAGCTGGTACTAGCAAAAGAGATTCTGTCATTGTTCCCCTTAGGTGCCCTTTGGTGAAAATGAGGGACATGAGAATGTAAGaatgtttttacattataaacTGAATTTATTAGGAATGTGTATATAAGTTGCTCATTTATTTGACTTTCATTagttctgtttttacattactaatgtcaggaggattttttttattttgctaggCCATCACACAGTCGGACGGAAGCTTCAACAGAGCCAGTGGGTGTACAGTTTAAAACATCATCATTGTACACCGCAACCTTCTTCACCAAGTCCAGATGAAACCGTACCAAGTGAGTTGTTGTCTCTGATAAAGAAGATGCGACCAGACAACTTATCATCAATAAAGACTGCAATCAATCAAACCTTCAGTTACAGAAGAAGATGGATAACAACAAAATCCCTTCAAAATCTCTTGCTGAAATCTTCAAGGACTATCCCAGATTTCTTGACATGCCAGCtttggtaatagacatgctcaaCTAAGACAGAACTTTACACAGACATTTATGtcataattgtaatattaatatttctttgtttctgatttctttctttctttaaagaTGGACATTGAATTTTCCAAGCTCACAGATAGGAACGAAGACTTGTTTATCCAGAAAAGGGAAGGGACGATAATTCCAGAACTCAAAGAAATAGCATCTTGGAGAAGAATATTGACATCAGACTCTTACTGAAGATGGCTGACAATCAGCATGATGGTATGAGTTTCAGCCAAAATATCTGTTGCATGTGCACACTTttctaaaaatagtttaaaagatAAAACTTAATGTGAATATTAATATTCTATTAAAGATATTAATttctaatatattttgtttaaattcttATTTTGCATGTGACCTGTATCTTCACTTCAAGATGAGCTGTTAAACTGTTAAAGATCCTTATTCATCTTCTTCCACCCACTGCCTCTGGGAGAAGTGTTGCTGGGAGTAAATGCTGTGTGACTTCTGCTGTGTCCTACCTGTTGGAGCAAGTGCCGGTATAGTTTTTATTGGTTTAGcttatgataaataaaatgtttctaatgcagcaacaTTTTCTTATGCTTTTTATTGTTTCATTCCTGAAGGCTGGTACCACCGTTACATCTTTGCTCACTGAATCCATGAAAGGGACCCTGAAGTCAGCTCAGCCGCAGTTGGTTTCTATTGGTTGTCTAGGACATGGATCCTTGTACGTGTACGTGTACTTGTAGCTGTGGCAAAGAATGACTCTTTTGCTCTTCCACTCGATCCTGAAAGCCTGACC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013766 lncRNA downstream 272625 13737542 ~ 13740560 (-) True XLOC_006514
TCONS_00012618 lncRNA downstream 351652 13660732 ~ 13661533 (-) True XLOC_006512
TCONS_00013765 lncRNA downstream 423359 13587296 ~ 13589826 (-) False XLOC_006510
TCONS_00013764 lncRNA downstream 1256524 12748652 ~ 12756661 (-) True XLOC_006507
TCONS_00012611 lncRNA downstream 1353420 12659113 ~ 12659765 (-) True XLOC_006505
TCONS_00013468 lncRNA upstream 517540 14532720 ~ 14533254 (-) True XLOC_006519
TCONS_00012627 lncRNA upstream 891227 14906407 ~ 14908969 (-) True XLOC_006520
TCONS_00013768 lncRNA upstream 935615 14950795 ~ 14981580 (-) True XLOC_006522
TCONS_00013469 lncRNA upstream 1441496 15456676 ~ 15457624 (-) True XLOC_006525
TCONS_00012632 lncRNA upstream 1559957 15575137 ~ 15580152 (-) False XLOC_006526
TCONS_00012621 mRNA downstream 259094 13743825 ~ 13754091 (-) True XLOC_006515
TCONS_00012620 mRNA downstream 262168 13743202 ~ 13751017 (-) False XLOC_006515
TCONS_00012617 mRNA downstream 350561 13660564 ~ 13662624 (-) False XLOC_006512
TCONS_00012614 mRNA downstream 718313 13213567 ~ 13294872 (-) True XLOC_006509
TCONS_00012613 mRNA downstream 982334 12993851 ~ 13030851 (-) True XLOC_006508
TCONS_00012622 mRNA upstream 176113 14191293 ~ 14487524 (-) False XLOC_006517
TCONS_00012623 mRNA upstream 179818 14194998 ~ 14269626 (-) True XLOC_006517
TCONS_00012625 mRNA upstream 887138 14902318 ~ 14908999 (-) False XLOC_006520
TCONS_00012626 mRNA upstream 887394 14902574 ~ 14908664 (-) False XLOC_006520
TCONS_00012628 mRNA upstream 900164 14915344 ~ 14929236 (-) False XLOC_006521
TCONS_00012619 other downstream 342648 13670440 ~ 13670537 (-) True XLOC_006513
TCONS_00012616 other downstream 368623 13644445 ~ 13644562 (-) True XLOC_006511
TCONS_00012615 other downstream 422615 13587296 ~ 13590570 (-) True XLOC_006510
TCONS_00012601 other downstream 1527193 12481378 ~ 12485992 (-) False XLOC_006499
TCONS_00012597 other downstream 1623622 12378215 ~ 12389563 (-) True XLOC_006498
TCONS_00012624 other upstream 369241 14384421 ~ 14384538 (-) True XLOC_006518
TCONS_00012658 other upstream 2292587 16307767 ~ 16307883 (-) True XLOC_006537
TCONS_00012667 other upstream 3759477 17774657 ~ 17860347 (-) False XLOC_006543
TCONS_00012681 other upstream 4629710 18644890 ~ 18645005 (-) True XLOC_006551
TCONS_00012682 other upstream 4634312 18649492 ~ 18649682 (-) True XLOC_006552

Expression Profile

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