RNA id: TCONS_00012682


Basic Information

Item Value
RNA id TCONS_00012682
length 191
RNA type snRNA
GC content 0.49
exon number 1
gene id XLOC_006552
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 18649492 ~ 18649682 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTGCCCTACCCGGGCACCATATATTAAATTGATTTTTGGAACAGGGAGATGGAATAGGGGCTTGCTCCGTCCACTCCACGCATCGACCCGGTATTGCAGTACCTCCGGGAACGGTGCACCCCCT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000186804

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012676 lncRNA downstream 474666 18167461 ~ 18174826 (-) True XLOC_006546
TCONS_00012668 lncRNA downstream 638284 17822517 ~ 18011208 (-) True XLOC_006543
TCONS_00013775 lncRNA downstream 892212 17751872 ~ 17757280 (-) False XLOC_006543
TCONS_00013472 lncRNA downstream 955673 17690661 ~ 17693819 (-) True XLOC_006541
TCONS_00013471 lncRNA downstream 958828 17686484 ~ 17690664 (-) False XLOC_006541
TCONS_00013474 lncRNA upstream 360490 19010172 ~ 19016833 (-) False XLOC_006556
TCONS_00013473 lncRNA upstream 360490 19010172 ~ 19016833 (-) True XLOC_006556
TCONS_00013475 lncRNA upstream 626491 19276173 ~ 19277332 (-) True XLOC_006557
TCONS_00013476 lncRNA upstream 688795 19338477 ~ 19339436 (-) True XLOC_006558
TCONS_00013478 lncRNA upstream 701169 19350851 ~ 19357011 (-) False XLOC_006559
TCONS_00012680 mRNA downstream 12248 18628920 ~ 18637244 (-) True XLOC_006550
TCONS_00012679 mRNA downstream 100763 18521493 ~ 18548729 (-) True XLOC_006549
TCONS_00012678 mRNA downstream 303638 18332685 ~ 18345854 (-) True XLOC_006548
TCONS_00012677 mRNA downstream 453550 18179096 ~ 18195942 (-) True XLOC_006547
TCONS_00012675 mRNA downstream 474628 18128275 ~ 18174864 (-) False XLOC_006546
TCONS_00012683 mRNA upstream 27746 18677428 ~ 18691041 (-) False XLOC_006553
TCONS_00012684 mRNA upstream 28224 18677906 ~ 18695289 (-) True XLOC_006553
TCONS_00012686 mRNA upstream 151412 18801094 ~ 18835278 (-) False XLOC_006555
TCONS_00012687 mRNA upstream 151412 18801094 ~ 18863680 (-) False XLOC_006555
TCONS_00012688 mRNA upstream 154032 18803714 ~ 18835254 (-) True XLOC_006555
TCONS_00012681 other downstream 4487 18644890 ~ 18645005 (-) True XLOC_006551
TCONS_00012667 other downstream 789145 17774657 ~ 17860347 (-) False XLOC_006543
TCONS_00012658 other downstream 2341609 16307767 ~ 16307883 (-) True XLOC_006537
TCONS_00012624 other downstream 4264954 14384421 ~ 14384538 (-) True XLOC_006518
TCONS_00012619 other downstream 4978955 13670440 ~ 13670537 (-) True XLOC_006513
TCONS_00012685 other upstream 65628 18715310 ~ 18715426 (-) True XLOC_006554
TCONS_00012693 other upstream 1567808 20217490 ~ 20222092 (-) False XLOC_006562
TCONS_00012694 other upstream 1570859 20220541 ~ 20222134 (-) True XLOC_006562
TCONS_00012695 other upstream 1577363 20227045 ~ 20231708 (-) False XLOC_006563
TCONS_00012696 other upstream 1580457 20230139 ~ 20231750 (-) True XLOC_006563

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU121670 True 370 lncRNA 0.36 2 CI01000019 563746 ~ 646426 (+)
bowfin (Amia calva) TU121670 True 322 lncRNA 0.48 1 CM030132.1 8719241 ~ 8719562 (+)
tiger barb (Puntius tetrazona) TU121670 True 275 lncRNA 0.55 1 NC_056709.1 15302067 ~ 15302341 (-)