Fish Transcriptome and Expression Database

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model fish

XLOC_006551 (CR932438.1)

Basic Information

Item	Value
gene id	XLOC_006551
gene name	CR932438.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007124.7
NCBI id	CM002897.2
chromosome length	52186027
location	18644890 ~ 18645005 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012681
TCCACAGCCATAtaaccctgcagcccaagactagTAACTCACTGAAGGtaggcagggctgagcctggccagtacctgtatgggagactacatgggaaaactaggctgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000108183

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00012681	True	116	rRNA	0.53	1	18644890	18645005

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_006550	mat1a	coding	downstream	7646	18628920 ~ 18637244 (-)
XLOC_006549	BX908770.1	coding	downstream	96161	18521493 ~ 18548729 (-)
XLOC_006548	si:dkey-228d14.5	coding	downstream	299036	18332685 ~ 18345854 (-)
XLOC_006547	slc25a16	coding	downstream	448948	18179096 ~ 18195942 (-)
XLOC_006546	alox5a	coding	downstream	470026	18128275 ~ 18174864 (-)
XLOC_006552	CR932438.2	coding	upstream	4487	18649492 ~ 18649682 (-)
XLOC_006553	sfxn3	coding	upstream	32423	18677428 ~ 18695289 (-)
XLOC_006554	CR932361.2	coding	upstream	70305	18715310 ~ 18715426 (-)
XLOC_006555	lzts2a	coding	upstream	156089	18801094 ~ 18863680 (-)
XLOC_006556	NA	coding	upstream	365167	19010172 ~ 19016833 (-)
XLOC_006471	BX537274.2	misc	downstream	8379985	10264741 ~ 10264905 (-)
XLOC_006338	rn7sk	misc	downstream	17818665	825904 ~ 826225 (-)
XLOC_006541	NA	non-coding	downstream	951071	17686484 ~ 17693819 (-)
XLOC_006540	NA	non-coding	downstream	1114354	17494297 ~ 17530536 (-)
XLOC_006538	NA	non-coding	downstream	1765820	16868380 ~ 16879070 (-)
XLOC_006537	BX323467.1	non-coding	downstream	2337007	16307767 ~ 16307883 (-)
XLOC_006536	NA	non-coding	downstream	2383317	16260651 ~ 16261573 (-)
XLOC_006557	NA	non-coding	upstream	631168	19276173 ~ 19277332 (-)
XLOC_006558	NA	non-coding	upstream	693472	19338477 ~ 19339436 (-)

Expression

Co-expression Network