XLOC_006540


Basic Information

Item Value
gene id XLOC_006540
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 17494297 ~ 17530536 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013771
GCCAGGATgagatatagagagagagagaatgtgaagTTACCGGAACATTGGCTGCTCAGTTGTCACTTCCCAAAAATTGCTGGAATAACTACTTGGCATTTATCTGTGAGTAAGTGGCCAATGGGGAAGCGGAGCTGGAGGataccaacatggggagaacatgctccacacagaaatgccaactgacccagccaggacttgaactgatgacctttttgctGTTTTATATGCCCACATATGCCCACTTGAGTAGCAATAGAAGCTTCCAGACCCCGCTCCATATGGCATGCAGCTGCAGATGACTGAACTGAGTGTCTATGAATTGTGGCTGTGCTCTTCAGAGAGGCGTCTGCTATCTGTGGGAGGTCATGGTACACAGACATCCTCTGAGTTCCACGCTGAAGTACGAGGGGTGATCGGGGTCAAGGAGACCATAGCAGGTGGAGGCTCCACCACCTCCCTCTGTGAAGGAGACATGTGGATGATGCATGGTGGGCAGATACCATGTACAGCCTTTGGGTCATTTTTCAAGTGCCTTTAAATTGCATGAAAGGCTGCAAatttgaaatgcattttaaaatgtaaatcatttgacGGACTGTTTTCAACACCATTCTGCTTTAAATTTGGGGTTtgtgatatttgttt
>TCONS_00013772
cacaatgacagggttttAGTTTGGCaaagaacaattccagaaagcagCGCCGCGGACCCATCTGAACTGCCAAAGCACTTCAAAGGCCTGCAGGTCATTTATCTTCCCCTGACGCGGGGGAAGCGGAGCTGGAGGataccaacatggggagaacatgctccacacagaaatgccaactgacccagccaggacttgaactgatgacctttttgctgtgaggcaacatttctaaccactgaaccactgtgccTTGTTTATAAATGGTTAACATAAAGCACAATCCTTGTGCTCCAACATGCACCTAAAAAATCTGTTGATAAGGTCATGGTCGGCAGCAGGAAAATATGttaaatgcaaaaaacaaaatgcaactgACCATATAATTGTATACATAATCATATTAGCTAGAAAATGCTTCTCACATGTCTCAAAGCATCCCACAACATGAGGAGTGAGTTATTGGCTGAACGCATGAACCCATCAcaccataataaaaaaaaactattttgaactgtatgatttaattaattagcttagCATTTCACAGAGTATCACAAGATTCACAATCGGCATCCATTCTAGAATGTCTATTTTAACTGTGCT
>TCONS_00013773
gtgaagTTACCGGAACATTGGCTGCTCAGTTGTCACTTCCCAAAAATTGCTGGAATAACTACTTGGCATTTATCTCGCCGCGGACCCATCTGAACTGCCAAAGCACTTCAAAGGCCTGCAGGTCATTTATCTTCCCCTGACGCGGGGGAAGCGGAGCTGGAGGataccaacatggggagaacatgctccacacagaaatgccaactgacccagccaggacttgaactgatgacctttttgctgtgaggcaacatttctaaccactgaaccactgtgccTTGTTTATAAATGGTTAACATAAAGCACAATCCTTGTGCTCCAACATGCACCTAAAAAATCTGTTGATAAGGTCATGGTCGGCAGCAGGAAAATATGttaaatgcaaaaaacaaaatgcaactgACCATATAATTGTATACATAATCATATTAGCTAGAAAATGCTTCTCACATGTCTCAAAGCATCCCACAACATGAGGAGTGAGTTATTGGCTGAACGCATGAACCCATCAcaccataataaaaaaaaactattttgaactgtatgatttaattaattagcttagCATTTCACAGAGTATCACAAGATTCACAATCGGCATCCATTCTAGAATGTCTATTTTAACTGTGCT
>TCONS_00013774
AAGCGTTCTGCGAGAGGCTCTGCGCAAGTGCCGGAAACCCGAGACGAGACACATAGCGGGGGTCAGCGCGTCTCCGCTGATTTACACGTGGGTTAGTTAGTGCCAGGATgagatatagagagagagagaatgtgaagTTACCGGAACATTGGCTGCTCAGTTGTCACTTCCCAAAAATTGCTGGAATAACTACTTGGCATTTATCTGGGGAAGCGGAGCTGGAGGataccaacatggggagaacatgctccacacagaaatgccaactgacccagccaggacttgaactgatgacctttttgctgtgaggcaacatttctaaccactgaaccactgtgccTTGTTTATAAATGGTTAACATAAAGCACAATCCTTGTGCTCCAACATGCACCTAAAAAATCTGTTGATAAGGTCATGGTCGGCAGCAGGAAAATATGttaaatgcaaaaaacaaaatgcaactgACCATATAATTGTATACATAATCATATTAGCTAGAAAATGCTTCTCACATGTCTCAAAGCATCCCACAACATGAGGAGTGAGTTATTGGCTGAACGCATGAACCCATCAcaccataataaaaaaaaactattttgaactgtatgatttaattaattagcttagCATTTCACAGAGTATCACAAGATTCACAATCGGCATCCATTCTAGAATGTCTATTTTAACTGTGCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013771 False 648 lncRNA 0.46 3 17494297 17530435
TCONS_00013772 False 603 lncRNA 0.41 3 17521005 17526496
TCONS_00013773 False 631 lncRNA 0.41 3 17521005 17530405
TCONS_00013774 True 693 lncRNA 0.42 2 17521005 17530536

Neighbor

gene id symbol gene type direction distance location
XLOC_006539 lrmda coding downstream 29643 16922705 ~ 17464654 (-)
XLOC_006538 NA coding downstream 615227 16868380 ~ 16879070 (-)
XLOC_006537 BX323467.1 coding downstream 1186414 16307767 ~ 16307883 (-)
XLOC_006536 NA coding downstream 1232724 16260651 ~ 16261573 (-)
XLOC_006535 zgc:110045 coding downstream 1236449 16230556 ~ 16257848 (-)
XLOC_006541 NA coding upstream 155948 17686484 ~ 17693819 (-)
XLOC_006542 vdac2 coding upstream 183760 17714296 ~ 17729474 (-)
XLOC_006543 march8 coding upstream 221330 17751866 ~ 18011208 (-)
XLOC_006544 zfand4 coding upstream 489173 18019709 ~ 18069421 (-)
XLOC_006545 washc2c coding upstream 542675 18073211 ~ 18122333 (-)
XLOC_006471 BX537274.2 misc downstream 7229392 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 16668072 825904 ~ 826225 (-)
XLOC_006526 BX511166.1 non-coding downstream 1914145 15575137 ~ 15580152 (-)
XLOC_006525 NA non-coding downstream 2036673 15456676 ~ 15457624 (-)
XLOC_006551 CR932438.1 non-coding upstream 1114354 18644890 ~ 18645005 (-)
XLOC_006552 CR932438.2 non-coding upstream 1118956 18649492 ~ 18649682 (-)
XLOC_006554 CR932361.2 non-coding upstream 1184774 18715310 ~ 18715426 (-)
XLOC_006556 NA non-coding upstream 1479636 19010172 ~ 19016833 (-)

Expression


Co-expression Network